Visual QC Protocol for FreeSurfer cortical parcellations from anatomical MRI
PR Raamana, A Theyers, T Selliah, P Bhati, SR Arnott… - BioRxiv, 2020 - biorxiv.org
… Here, we present a protocol for visual quality control of the anatomical accuracy of
FreeSurfer parcellations, based on an easy-to-use open source tool called VisualQC. We …
FreeSurfer parcellations, based on an easy-to-use open source tool called VisualQC. We …
[HTML][HTML] Feasibility of FreeSurfer processing for T1-weighted brain images of 5-year-olds: semiautomated protocol of FinnBrain Neuroimaging Lab
EP Pulli, E Silver, V Kumpulainen… - Frontiers in …, 2022 - frontiersin.org
… to visits due to the restrictions caused by the coronavirus disease 2019 (COVID-19) pandemic.
The scans were performed between 29 October, 2017 and 1 March, 2020. We contacted …
The scans were performed between 29 October, 2017 and 1 March, 2020. We contacted …
[HTML][HTML] Neuroinflammation and white matter alterations in obesity assessed by diffusion basis spectrum imaging
… In both cohorts, total hippocampal and amygdalar volumes for each individual were
computed using FreeSurfer 6.0 segmentation 1 of corresponding structural MRI images. …
computed using FreeSurfer 6.0 segmentation 1 of corresponding structural MRI images. …
[HTML][HTML] FreeSurfer 7 quality control: Key problem areas and importance of manual corrections
V Vahermaa, DB Aydogan, T Raij, RL Armio… - NeuroImage, 2023 - Elsevier
… Code availability The software used for this study is Freesurfer, which is publicly … The
software used for this study is Freesurfer, which is publicly …
software used for this study is Freesurfer, which is publicly …
[HTML][HTML] 7 Tesla MRI of the ex vivo human brain at 100 micron resolution
… more RAM than what was available. We therefore implemented software on the scanner to
… to a computational server where we ran custom software to stitch together the segments, …
… to a computational server where we ran custom software to stitch together the segments, …
Leptomeningeal contrast enhancement is related to focal cortical thinning in relapsing-remitting multiple sclerosis: A cross-sectional MRI study
N Bergsland, D Ramasamy, E Tavazzi… - American Journal …, 2019 - Am Soc Neuroradiology
… The 3D-T2 FLAIR precontrast image was then registered to the FreeSurfer-conformed T1
image using the bbregister tool (https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister). Individual …
image using the bbregister tool (https://surfer.nmr.mgh.harvard.edu/fswiki/bbregister). Individual …
[HTML][HTML] Cortical and subcortical brain area atrophy in SCA1 and SCA2 patients in India: the structural MRI underpinnings and correlative insight among the atrophy …
… FreeSurfer's automatic parcellation of the cerebral cortex into 68 regions (34 per
hemisphere). FreeSurfer software … version of FreeSurfer (ver. 6; ftp://surfer.nmr.mgh.harvard.edu/pub/dist/…
hemisphere). FreeSurfer software … version of FreeSurfer (ver. 6; ftp://surfer.nmr.mgh.harvard.edu/pub/dist/…
Quantitative brain morphometry of portable low-field-strength MRI using super-resolution machine learning
… We considered four publicly available segmentation tools (FreeSurfer [5], SynthSeg [13,14], …
T1- and T2-weighted information, whereas FreeSurfer and FSL-FIRST can only use the T1-…
T1- and T2-weighted information, whereas FreeSurfer and FSL-FIRST can only use the T1-…
[HTML][HTML] … of brain atrophy measurements in multiple sclerosis using MRI: an assessment of six freely available software packages for cross-sectional analyses
DR Van Nederpelt, H Amiri, I Brouwer, S Noteboom… - Neuroradiology, 2023 - Springer
… Therefore, we also normalized FreeSurfer volumes with the … study of 6 freely available
software packages for brain volume … present between all the software packages examined. As …
software packages for brain volume … present between all the software packages examined. As …
Individual variations in 'brain age'relate to early-life factors more than to longitudinal brain change
… assessed brain change with a composite score of structural brain change as obtained using
principal component (PC) … as a result of being estimated through the longitudinal FreeSurfer …
principal component (PC) … as a result of being estimated through the longitudinal FreeSurfer …