[HTML][HTML] Evaluation of de novo transcriptome assemblies from RNA-Seq data
B Li, N Fillmore, Y Bai, M Collins, JA Thomson… - Genome biology, 2014 - Springer
De novo RNA-Seq assembly facilitates the study of transcriptomes for species without
sequenced genomes, but it is challenging to select the most accurate assembly in this …
sequenced genomes, but it is challenging to select the most accurate assembly in this …
[HTML][HTML] Current status and future perspectives for sequencing livestock genomes
Y Bai, M Sartor, J Cavalcoli - Journal of animal science and biotechnology, 2012 - Springer
Only in recent years, the draft sequences for several agricultural animals have been
assembled. Assembling an individual animal's entire genome sequence or specific region …
assembled. Assembling an individual animal's entire genome sequence or specific region …
Characterization of plant laccase genes and their functions
Y Bai, S Ali, S Liu, J Zhou, Y Tang - Gene, 2023 - Elsevier
Laccase is a copper-containing polyphenol oxidase found in different organisms. The
multigene family that encodes laccases is widely distributed in plant genomes. Plant …
multigene family that encodes laccases is widely distributed in plant genomes. Plant …
Comparison of alternative splicing junction detection tools using RNASeq data
Background: Alternative splicing (AS) is a posttranscriptional process that produces different
transcripts from the same gene and is important to produce diverse protein products in …
transcripts from the same gene and is important to produce diverse protein products in …
[HTML][HTML] The IRE1α/XBP1s pathway is essential for the glucose response and protection of β cells
JR Hassler, DL Scheuner, S Wang, J Han… - PLoS …, 2015 - journals.plos.org
Although glucose uniquely stimulates proinsulin biosynthesis in β cells, surprisingly little is
known of the underlying mechanism (s). Here, we demonstrate that glucose activates the …
known of the underlying mechanism (s). Here, we demonstrate that glucose activates the …
[HTML][HTML] Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila
Background Processed copies of genes (retrogenes) are duplicate genes that originated
through the reverse-transcription of a host transcript and insertion in the genome. This type …
through the reverse-transcription of a host transcript and insertion in the genome. This type …
SEC24A deficiency lowers plasma cholesterol through reduced PCSK9 secretion
The secretory pathway of eukaryotic cells packages cargo proteins into COPII-coated
vesicles for transport from the endoplasmic reticulum (ER) to the Golgi. We now report that …
vesicles for transport from the endoplasmic reticulum (ER) to the Golgi. We now report that …
[HTML][HTML] SARS-COV-2 as potential microRNA sponge in COVID-19 patients
C Li, R Wang, A Wu, T Yuan, K Song, Y Bai… - BMC Medical …, 2022 - Springer
Background MicroRNAs (miRNAs) are a class of small non-coding RNA that can
downregulate their targets by selectively binding to the 3′ untranslated region (3′ UTR) of …
downregulate their targets by selectively binding to the 3′ untranslated region (3′ UTR) of …
Engineering deep learning methods on automatic detection of damage in infrastructure due to extreme events
This paper presents a few comprehensive experimental studies for automated Structural
Damage Detection (SDD) in extreme events using deep learning methods for processing 2D …
Damage Detection (SDD) in extreme events using deep learning methods for processing 2D …
[HTML][HTML] Nuclear transport of cancer extracellular vesicle-derived biomaterials through nuclear envelope invagination-associated late endosomes
G Rappa, MF Santos, TM Green, J Karbanová… - Oncotarget, 2017 - ncbi.nlm.nih.gov
Extracellular membrane vesicles (EVs) function as vehicles of intercellular communication,
but how the biomaterials they carry reach the target site in recipient cells is an open …
but how the biomaterials they carry reach the target site in recipient cells is an open …