User profiles for "author:San Ming Wang"

San Ming Wang

University of Macau
Verified email at umac.mo
Cited by 4500

[HTML][HTML] Applications of molecular dynamics simulation in protein study

S Sinha, B Tam, SM Wang - Membranes, 2022 - mdpi.com
Molecular Dynamics (MD) Simulations is increasingly used as a powerful tool to study
protein structure-related questions. Starting from the early simulation study on the …

[HTML][HTML] Interpreting expression profiles of cancers by genome-wide survey of breadth of expression in normal tissues

X Ge, S Yamamoto, S Tsutsumi, Y Midorikawa, S Ihara… - Genomics, 2005 - Elsevier
A critical and difficult part of studying cancer with DNA microarrays is data interpretation.
Besides the need for data analysis algorithms, integration of additional information about …

The birth and death of microRNA genes in Drosophila

J Lu, Y Shen, Q Wu, S Kumar, B He, S Shi… - Nature …, 2008 - nature.com
MicroRNAs (miRNAs) are small, endogenously expressed RNAs that regulate mRNAs post-
transcriptionally. The class of miRNA genes, like other gene classes, should experience …

Transcriptional activation of estrogen receptor α in human breast cancer cells by histone deacetylase inhibition

X Yang, AT Ferguson, SJ Nass, DL Phillips, KA Butash… - Cancer research, 2000 - AACR
Recent findings have established a connection between DNA methylation and
transcriptionally inactive chromatin characterized by deacetylated histones. Because the …

Oligo (dT) primer generates a high frequency of truncated cDNAs through internal poly (A) priming during reverse transcription

DK Nam, S Lee, G Zhou, X Cao… - Proceedings of the …, 2002 - National Acad Sciences
We have analyzed a systematic flaw in the current system of gene identification: the oligo
(dT) primer widely used for cDNA synthesis generates a high frequency of truncated cDNAs …

[HTML][HTML] Gene transfer efficiency and genome-wide integration profiling of Sleeping Beauty, Tol2, and piggyBac transposons in human primary T cells

X Huang, H Guo, S Tammana, YC Jung, E Mellgren… - Molecular Therapy, 2010 - cell.com
In this study, we compared the genomic integration efficiencies and transposition site
preferences of Sleeping Beauty (SB or SB11), Tol2, and piggyBac (PB) transposon systems …

[HTML][HTML] 2.45 GHz radiofrequency fields alter gene expression in cultured human cells

S Lee, D Johnson, K Dunbar, H Dong, X Ge, YC Kim… - Febs letters, 2005 - Elsevier
The biological effect of radiofrequency (RF) fields remains controversial. We address this
issue by examining whether RF fields can cause changes in gene expression. We used the …

Understanding SAGE data

SM Wang - Trends in genetics, 2007 - cell.com
Serial analysis of gene expression (SAGE) is a method for identifying and quantifying
transcripts from eukaryotic genomes. Since its invention, SAGE has been widely applied to …

[HTML][HTML] Classification of VUS and unclassified variants in BRCA1 BRCT repeats by molecular dynamics simulation

S Sinha, SM Wang - Computational and Structural Biotechnology Journal, 2020 - Elsevier
Pathogenic mutation in BRCA1 gene is one of the most penetrant genetic predispositions
towards cancer. Identification of the mutation provides important aspect in prevention and …

[HTML][HTML] Poly A-transcripts expressed in HeLa cells

Q Wu, YC Kim, J Lu, Z Xuan, J Chen, Y Zheng, T Zhou… - PloS one, 2008 - journals.plos.org
Background Transcripts expressed in eukaryotes are classified as poly A+ transcripts or poly
A-transcripts based on the presence or absence of the 3′ poly A tail. Most transcripts …