[HTML][HTML] Why assembling plant genome sequences is so challenging

MG Claros, R Bautista, D Guerrero-Fernández… - Biology, 2012 - mdpi.com
In spite of the biological and economic importance of plants, relatively few plant species
have been sequenced. Only the genome sequence of plants with relatively small genomes …

Regulatory variants: from detection to predicting impact

E Rojano, P Seoane, JAG Ranea… - Briefings in …, 2019 - academic.oup.com
Variants within non-coding genomic regions can greatly affect disease. In recent years,
increasing focus has been given to these variants, and how they can alter regulatory …

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology

J Canales, R Bautista, P Label… - Plant Biotechnology …, 2014 - Wiley Online Library
Maritime pine (P inus pinaster A it.) is a widely distributed conifer species in S outhwestern E
urope and one of the most advanced models for conifer research. In the current work …

[HTML][HTML] ReprOlive: a database with linked data for the olive tree (Olea europaea L.) reproductive transcriptome

R Carmona, A Zafra, P Seoane, AJ Castro… - Frontiers in Plant …, 2015 - frontiersin.org
Plant reproductive transcriptomes have been analyzed in different species due to the
agronomical and biotechnological importance of plant reproduction. Here we presented an …

[HTML][HTML] Large-Scale Transcriptome Analysis in Faba Bean (Vicia faba L.) under Ascochyta fabae Infection

S Ocaña, P Seoane, R Bautista, C Palomino… - PLoS …, 2015 - journals.plos.org
Faba bean is an important food crop worldwide. However, progress in faba bean genomics
lags far behind that of model systems due to limited availability of genetic and genomic …

[HTML][HTML] Automated identification of reference genes based on RNA-seq data

R Carmona, M Arroyo, MJ Jiménez-Quesada… - Biomedical engineering …, 2017 - Springer
Background Gene expression analyses demand appropriate reference genes (RGs) for
normalization, in order to obtain reliable assessments. Ideally, RG expression levels should …

Genetic and physical mapping of the QTLAR3 controlling blight resistance in chickpea (Cicer arietinum L)

E Madrid, P Seoane, MG Claros, F Barro, J Rubio, J Gil… - Euphytica, 2014 - Springer
Physical and genetic maps of chickpea a QTL related to Ascochyta blight resistance and
located in LG2 (QTL AR3) have been constructed. Single-copy markers based on candidate …

[HTML][HTML] Phenotype-genotype comorbidity analysis of patients with rare disorders provides insight into their pathological and molecular bases

E Díaz-Santiago, FM Jabato, E Rojano, P Seoane… - PLoS …, 2020 - journals.plos.org
Genetic and molecular analysis of rare disease is made difficult by the small numbers of
affected patients. Phenotypic comorbidity analysis can help rectify this by combining …

[HTML][HTML] The haustorial transcriptome of the cucurbit pathogen Podosphaera xanthii reveals new insights into the biotrophy and pathogenesis of powdery mildew …

Á Polonio, P Seoane, MG Claros, A Pérez-García - BMC genomics, 2019 - Springer
Background Podosphaera xanthii is the main causal agent of powdery mildew disease in
cucurbits and is responsible for important yield losses in these crops worldwide. Powdery …

[HTML][HTML] Development of whole-genome multiplex assays and construction of an integrated genetic map using SSR markers in Senegalese sole

I Guerrero-Cózar, C Perez-Garcia, H Benzekri… - Scientific Reports, 2020 - nature.com
Abstract The Senegalese sole (Solea senegalensis) is an economically important flatfish
species. In this study, a genome draft was analyzed to identify microsatellite (SSR) markers …