User profiles for "author:Paul McGettigan"

Paul McGettigan

Bioinformatician
Verified email at novartis.com
Cited by 35449

Transcriptomics in the RNA-seq era

PA McGettigan - Current opinion in chemical biology, 2013 - Elsevier
The transcriptomics field has developed rapidly with the advent of next-generation
sequencing technologies. RNA-seq has now displaced microarrays as the preferred method …

Clustal W and Clustal X version 2.0

MA Larkin, G Blackshields, NP Brown, R Chenna… - …, 2007 - academic.oup.com
The Clustal W and Clustal X multiple sequence alignment programs have been completely
rewritten in C++. This will facilitate the further development of the alignment algorithms in the …

[HTML][HTML] Genome sequencing of the extinct Eurasian wild aurochs, Bos primigenius, illuminates the phylogeography and evolution of cattle

SDE Park, DA Magee, PA McGettigan, MD Teasdale… - Genome biology, 2015 - Springer
Background Domestication of the now-extinct wild aurochs, Bos primigenius, gave rise to the
two major domestic extant cattle taxa, B. taurus and B. indicus. While previous genetic …

[HTML][HTML] Proteomic analysis of uterine fluid during the pre-implantation period of pregnancy in cattle

N Forde, PA McGettigan, JP Mehta, L O'Hara… - …, 2014 - rep.bioscientifica.com
Gonadal sex differentiation proceeds by the interplay of various genes including the
transcription factors and secretory factors in a complex network. The sex-differentiating …

[HTML][HTML] A Complete Mitochondrial Genome Sequence from a Mesolithic Wild Aurochs (Bos primigenius)

CJ Edwards, DA Magee, SDE Park, PA McGettigan… - PLoS …, 2010 - journals.plos.org
Background The derivation of domestic cattle from the extinct wild aurochs (Bos primigenius)
has been well-documented by archaeological and genetic studies. Genetic studies point …

Evidence for an early endometrial response to pregnancy in cattle: both dependent upon and independent of interferon tau

N Forde, GB Duffy, PA McGettigan… - Physiological …, 2012 - journals.physiology.org
The aims of this study were to 1) identify the earliest transcriptional response of the bovine
endometrium to the presence of the conceptus (using RNAseq), 2) investigate if these genes …

[HTML][HTML] Co-regulation of Gremlin and Notch signalling in diabetic nephropathy

DW Walsh, SA Roxburgh, P McGettigan… - … et Biophysica Acta (BBA …, 2008 - Elsevier
Diabetic nephropathy is currently the leading cause of end-stage renal disease worldwide,
and occurs in approximately one third of all diabetic patients. The molecular pathogenesis of …

RNA sequencing reveals novel gene clusters in bovine conceptuses associated with maternal recognition of pregnancy and implantation

S Mamo, JP Mehta, P McGettigan, T Fair… - Biology of …, 2011 - academic.oup.com
Successful establishment and maintenance of pregnancy can be attained only through
optimum conceptus-maternal cross talk. Despite significant progress in our understanding of …

Conceptus-endometrium crosstalk during maternal recognition of pregnancy in cattle

S Mamo, JP Mehta, N Forde, P McGettigan… - Biology of …, 2012 - academic.oup.com
Successful growth and development of the posthatching blastocyst and pregnancy
establishment are a result of the interaction between a competent embryo and a receptive …

Identification of a mutation in LARS as a novel cause of infantile hepatopathy

JP Casey, P McGettigan, N Lynam-Lennon… - Molecular genetics and …, 2012 - Elsevier
Infantile hepatopathies are life-threatening liver disorders that manifest in the first few
months of life. We report on a consanguineous Irish Traveller family that includes six …