User profiles for "author:P D Adams"
Paul D. AdamsLawrence Berkeley Laboratory & University of California Berkeley Verified email at lbl.gov Cited by 121539 |
[HTML][HTML] Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix
D Liebschner, PV Afonine, ML Baker… - … Section D: Structural …, 2019 - scripts.iucr.org
Diffraction (X-ray, neutron and electron) and electron cryo-microscopy are powerful methods
to determine three-dimensional macromolecular structures, which are required to …
to determine three-dimensional macromolecular structures, which are required to …
[PDF][PDF] Cellular senescence: defining a path forward
Cellular senescence is a cell state implicated in various physiological processes and a wide
spectrum of age-related diseases. Recently, interest in therapeutically targeting senescence …
spectrum of age-related diseases. Recently, interest in therapeutically targeting senescence …
The Phenix software for automated determination of macromolecular structures
PD Adams, PV Afonine, G Bunkóczi, VB Chen… - Methods, 2011 - Elsevier
X-ray crystallography is a critical tool in the study of biological systems. It is able to provide
information that has been a prerequisite to understanding the fundamentals of life. It is also a …
information that has been a prerequisite to understanding the fundamentals of life. It is also a …
[HTML][HTML] PHENIX: a comprehensive Python-based system for macromolecular structure solution
PD Adams, PV Afonine, G Bunkóczi… - … Section D: Biological …, 2010 - scripts.iucr.org
Macromolecular X-ray crystallography is routinely applied to understand biological
processes at a molecular level. However, significant time and effort are still required to solve …
processes at a molecular level. However, significant time and effort are still required to solve …
Accurate prediction of protein structures and interactions using a three-track neural network
DeepMind presented notably accurate predictions at the recent 14th Critical Assessment of
Structure Prediction (CASP14) conference. We explored network architectures that …
Structure Prediction (CASP14) conference. We explored network architectures that …
[HTML][HTML] Phaser crystallographic software
Phaser is a program for phasing macromolecular crystal structures by both molecular
replacement and experimental phasing methods. The novel phasing algorithms …
replacement and experimental phasing methods. The novel phasing algorithms …
[HTML][HTML] Towards automated crystallographic structure refinement with phenix. refine
PV Afonine, RW Grosse-Kunstleve… - … Section D: Biological …, 2012 - scripts.iucr.org
phenix. refine is a program within the PHENIX package that supports crystallographic
structure refinement against experimental data with a wide range of upper resolution limits …
structure refinement against experimental data with a wide range of upper resolution limits …
Crystallography & NMR system: A new software suite for macromolecular structure determination
A new software suite, called Crystallography & NMR System (CNS), has been developed for
macromolecular structure determination by X-ray crystallography or solution nuclear …
macromolecular structure determination by X-ray crystallography or solution nuclear …
MolProbity: More and better reference data for improved all‐atom structure validation
CJ Williams, JJ Headd, NW Moriarty… - Protein …, 2018 - Wiley Online Library
This paper describes the current update on macromolecular model validation services that
are provided at the MolProbity website, emphasizing changes and additions since the …
are provided at the MolProbity website, emphasizing changes and additions since the …
[HTML][HTML] PHENIX: building new software for automated crystallographic structure determination
Structural genomics seeks to expand rapidly the number of protein structures in order to
extract the maximum amount of information from genomic sequence databases. The advent …
extract the maximum amount of information from genomic sequence databases. The advent …