User profiles for "author:Can Alkan"

Can Alkan

Bilkent University, Ankara, Turkey
Verified email at cs.bilkent.edu.tr
Cited by 68107

Genome structural variation discovery and genotyping

C Alkan, BP Coe, EE Eichler - Nature reviews genetics, 2011 - nature.com
Comparisons of human genomes show that more base pairs are altered as a result of
structural variation—including copy number variation—than as a result of point mutations …

Limitations of next-generation genome sequence assembly

C Alkan, S Sajjadian, EE Eichler - Nature methods, 2011 - nature.com
High-throughput sequencing technologies promise to transform the fields of genetics and
comparative biology by delivering tens of thousands of genomes in the near future. Although …

Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions

D Senol Cali, JS Kim, S Ghose, C Alkan… - Briefings in …, 2019 - academic.oup.com
Nanopore sequencing technology has the potential to render other sequencing
technologies obsolete with its ability to generate long reads and provide portability …

A draft sequence of the Neandertal genome

RE Green, J Krause, AW Briggs, T Maricic, U Stenzel… - science, 2010 - science.org
Neandertals, the closest evolutionary relatives of present-day humans, lived in large parts of
Europe and western Asia before disappearing 30,000 years ago. We present a draft …

[PDF][PDF] A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD

AE Renton, E Majounie, A Waite, J Simón-Sánchez… - Neuron, 2011 - cell.com
The chromosome 9p21 amyotrophic lateral sclerosis-frontotemporal dementia (ALS-FTD)
locus contains one of the last major unidentified autosomal-dominant genes underlying …

[HTML][HTML] An integrated map of structural variation in 2,504 human genomes

PH Sudmant, T Rausch, EJ Gardner, RE Handsaker… - Nature, 2015 - nature.com
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …

[HTML][HTML] Genetic history of an archaic hominin group from Denisova Cave in Siberia

D Reich, RE Green, M Kircher, J Krause, N Patterson… - Nature, 2010 - nature.com
Using DNA extracted from a finger bone found in Denisova Cave in southern Siberia, we
have sequenced the genome of an archaic hominin to about 1.9-fold coverage. This …

A high-coverage genome sequence from an archaic Denisovan individual

M Meyer, M Kircher, MT Gansauge, H Li, F Racimo… - Science, 2012 - science.org
We present a DNA library preparation method that has allowed us to reconstruct a high-
coverage (30×) genome sequence of a Denisovan, an extinct relative of Neandertals. The …

Mapping and sequencing of structural variation from eight human genomes

JM Kidd, GM Cooper, WF Donahue, HS Hayden… - Nature, 2008 - nature.com
Genetic variation among individual humans occurs on many different scales, ranging from
gross alterations in the human karyotype to single nucleotide changes. Here we explore …

Mapping copy number variation by population-scale genome sequencing

RE Mills, K Walter, C Stewart, RE Handsaker, K Chen… - Nature, 2011 - nature.com
Genomic structural variants (SVs) are abundant in humans, differing from other forms of
variation in extent, origin and functional impact. Despite progress in SV characterization, the …