User profiles for "author:Can Alkan"
Can AlkanBilkent University, Ankara, Turkey Verified email at cs.bilkent.edu.tr Cited by 68107 |
Genome structural variation discovery and genotyping
Comparisons of human genomes show that more base pairs are altered as a result of
structural variation—including copy number variation—than as a result of point mutations …
structural variation—including copy number variation—than as a result of point mutations …
Limitations of next-generation genome sequence assembly
C Alkan, S Sajjadian, EE Eichler - Nature methods, 2011 - nature.com
High-throughput sequencing technologies promise to transform the fields of genetics and
comparative biology by delivering tens of thousands of genomes in the near future. Although …
comparative biology by delivering tens of thousands of genomes in the near future. Although …
Nanopore sequencing technology and tools for genome assembly: computational analysis of the current state, bottlenecks and future directions
Nanopore sequencing technology has the potential to render other sequencing
technologies obsolete with its ability to generate long reads and provide portability …
technologies obsolete with its ability to generate long reads and provide portability …
A draft sequence of the Neandertal genome
Neandertals, the closest evolutionary relatives of present-day humans, lived in large parts of
Europe and western Asia before disappearing 30,000 years ago. We present a draft …
Europe and western Asia before disappearing 30,000 years ago. We present a draft …
[PDF][PDF] A hexanucleotide repeat expansion in C9ORF72 is the cause of chromosome 9p21-linked ALS-FTD
The chromosome 9p21 amyotrophic lateral sclerosis-frontotemporal dementia (ALS-FTD)
locus contains one of the last major unidentified autosomal-dominant genes underlying …
locus contains one of the last major unidentified autosomal-dominant genes underlying …
[HTML][HTML] An integrated map of structural variation in 2,504 human genomes
Structural variants are implicated in numerous diseases and make up the majority of varying
nucleotides among human genomes. Here we describe an integrated set of eight structural …
nucleotides among human genomes. Here we describe an integrated set of eight structural …
[HTML][HTML] Genetic history of an archaic hominin group from Denisova Cave in Siberia
Using DNA extracted from a finger bone found in Denisova Cave in southern Siberia, we
have sequenced the genome of an archaic hominin to about 1.9-fold coverage. This …
have sequenced the genome of an archaic hominin to about 1.9-fold coverage. This …
A high-coverage genome sequence from an archaic Denisovan individual
We present a DNA library preparation method that has allowed us to reconstruct a high-
coverage (30×) genome sequence of a Denisovan, an extinct relative of Neandertals. The …
coverage (30×) genome sequence of a Denisovan, an extinct relative of Neandertals. The …
Mapping and sequencing of structural variation from eight human genomes
Genetic variation among individual humans occurs on many different scales, ranging from
gross alterations in the human karyotype to single nucleotide changes. Here we explore …
gross alterations in the human karyotype to single nucleotide changes. Here we explore …
Mapping copy number variation by population-scale genome sequencing
Genomic structural variants (SVs) are abundant in humans, differing from other forms of
variation in extent, origin and functional impact. Despite progress in SV characterization, the …
variation in extent, origin and functional impact. Despite progress in SV characterization, the …