Mechanism, factors, and physiological role of nonsense-mediated mRNA decay

Cell Mol Life Sci. 2015 Dec;72(23):4523-44. doi: 10.1007/s00018-015-2017-9. Epub 2015 Aug 18.

Abstract

Nonsense-mediated mRNA decay (NMD) is a translation-dependent, multistep process that degrades irregular or faulty messenger RNAs (mRNAs). NMD mainly targets mRNAs with a truncated open reading frame (ORF) due to premature termination codons (PTCs). In addition, NMD also regulates the expression of different types of endogenous mRNA substrates. A multitude of factors are involved in the tight regulation of the NMD mechanism. In this review, we focus on the molecular mechanism of mammalian NMD. Based on the published data, we discuss the involvement of translation termination in NMD initiation. Furthermore, we provide a detailed overview of the core NMD machinery, as well as several peripheral NMD factors, and discuss their function. Finally, we present an overview of diseases associated with NMD factor mutations and summarize the current state of treatment for genetic disorders caused by nonsense mutations.

Keywords: Exon junction complex; Genetic disease; NMD; Quality control; UPF1.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • 3' Untranslated Regions
  • Animals
  • Codon, Nonsense
  • DEAD-box RNA Helicases / genetics
  • Eukaryotic Initiation Factor-4A / genetics
  • Genetic Predisposition to Disease*
  • Humans
  • Mental Retardation, X-Linked / genetics
  • Mutation
  • Nonsense Mediated mRNA Decay / physiology*
  • Peptide Chain Termination, Translational / physiology
  • Phosphorylation
  • RNA Helicases
  • RNA-Binding Proteins / genetics
  • RNA-Binding Proteins / metabolism
  • Telomerase / genetics
  • Telomerase / metabolism
  • Trans-Activators / genetics
  • Trans-Activators / metabolism
  • Transcription Factors / genetics
  • Transcription Factors / metabolism

Substances

  • 3' Untranslated Regions
  • Codon, Nonsense
  • RBM8A protein, human
  • RNA-Binding Proteins
  • Trans-Activators
  • Transcription Factors
  • UPF2 protein, human
  • UPF3A protein, human
  • Eukaryotic Initiation Factor-4A
  • Telomerase
  • SMG6 protein, human
  • EIF4A3 protein, human
  • DEAD-box RNA Helicases
  • RNA Helicases
  • UPF1 protein, human