Two crystal structures demonstrate large conformational changes in the eukaryotic ribosomal translocase

Nat Struct Biol. 2003 May;10(5):379-85. doi: 10.1038/nsb923.

Abstract

Two crystal structures of yeast translation elongation factor 2 (eEF2) were determined: the apo form at 2.9 A resolution and eEF2 in the presence of the translocation inhibitor sordarin at 2.1 A resolution. The overall conformation of apo eEF2 is similar to that of its prokaryotic homolog elongation factor G (EF-G) in complex with GDP. Upon sordarin binding, the three tRNA-mimicking C-terminal domains undergo substantial conformational changes, while the three N-terminal domains containing the nucleotide-binding site form an almost rigid unit. The conformation of eEF2 in complex with sordarin is entirely different from known conformations observed in crystal structures of EF-G or from cryo-EM studies of EF-G-70S complexes. The domain rearrangements induced by sordarin binding and the highly ordered drug-binding site observed in the eEF2-sordarin structure provide a high-resolution structural basis for the mechanism of sordarin inhibition. The two structures also emphasize the dynamic nature of the ribosomal translocase.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Sequence
  • Apoproteins / chemistry
  • Apoproteins / ultrastructure
  • Binding Sites
  • Crystallography, X-Ray
  • Molecular Sequence Data
  • Peptide Elongation Factor 2 / chemistry*
  • Peptide Elongation Factor 2 / genetics
  • Peptide Elongation Factor 2 / ultrastructure
  • Protein Conformation
  • Ribosomes / genetics
  • Ribosomes / ultrastructure*
  • Saccharomyces cerevisiae / genetics
  • Saccharomyces cerevisiae / ultrastructure*
  • Saccharomyces cerevisiae Proteins / chemistry
  • Saccharomyces cerevisiae Proteins / genetics
  • Saccharomyces cerevisiae Proteins / ultrastructure

Substances

  • Apoproteins
  • Peptide Elongation Factor 2
  • Saccharomyces cerevisiae Proteins

Associated data

  • PDB/1K5X
  • PDB/1K5Y
  • PDB/1N0U
  • PDB/1N0V