The role of CSA and CSB protein in the oxidative stress response
Introduction
Reactive oxygen species (ROS) are constantly generated under normal conditions as a consequence of aerobic metabolism. The cell is endowed with an extensive antioxidant defense system to counteract ROS, either directly by interception of oxidative species or indirectly through reversal of oxidatively generated damage. When ROS overcome the defense systems of the cell and redox homeostasis is altered, the result is oxidative stress. Oxidative stress has been implicated in the development and progression of several diseases including: cancer; acquired immunodeficiency syndrome (AIDS); neurodegenerative diseases such as Huntington (HD), Parkinson (PD), amyotrophic lateral sclerosis (ALS), Alzheimer (AD), retinal degenerative disorders, as well as, in the process of aging (Visconti and Grieco, 2009, Torre et al., 2002, Lin and Beal, 2006). During the last decade, emerging evidence indicate that oxidative stress is also involved in several DNA repair related pathologies that present clinical features of neurodegeneration (Van Houten et al., 2006, Pascucci et al., 2011). These findings are consistent with the fact that the central nervous system uses large amounts of oxygen to fuel oxidative phosphorylation, and may be prone to oxidative stress. Cockayne Syndrome (CS) is an example of rare hereditary multisystem disease characterized by neurological and development impairment, with a rapid onset of features of aging. Clinical hallmarks of this syndrome include developmental delay, microcephaly, loss of subcutaneous fat, cutaneous photosensitivity, progressive hearing loss, and ocular anomalies. Mutations in CSA and CSB genes affecting transcription-coupled repair (TCR), the nucleotide excision repair (NER) subpathway dedicated to removal of transcription blocking lesions from the genome, cause the invariably fatal CS. CS-defective cells are sensitive to UV light, the recovery of RNA synthesis after UV-damage is delayed and apoptosis is triggered by the blocked transcription complex. Intriguingly, this photosensitivity does not lead to cancer (as in other NER-related diseases). The clinical symptoms of CS have been often explained as the consequence of hypersensitivity to oxidative stress. A large body of evidence indicates that upon oxidative stress CS-A and CS-B cells show increased cytotoxicity and accumulate oxidatively induced DNA damage (Tuo et al., 2001, D’Errico et al., 2007, Foresta et al., 2010). CS cells are defective in the repair of a variety of oxidatively generated DNA lesions including 8-oxoguanine (8-OH-Gua), 5-hydroxycytosine (5-OHCyt) and cyclopurines. Moreover, evidence has been provided that CSB might also participate to the repair of abasic sites (Wong et al., 2007). CS proteins have been shown to stimulate the activity of key base excision repair (BER) enzymes (e.g. Neil1, APE1) (Wong et al., 2007, Muftuoglu et al., 2009) and/or to affect their transcription (as in the case of OGG1) (Khobta et al., 2009). However, it is unlikely that the dramatic phenotype of patients with CS is solely due to the role of CS proteins as dispensable co-factors of BER in the removal of nuclear oxidatively generated DNA damage. A new hypothesis has recently emerged to explain CS pathology: CS proteins may be involved in the maintenance of mitochondria that are the primary source of ROS. Elevated levels of oxidatively generated mitochondrial DNA (mtDNA) damage, hypersensitivity to bioenergetic inhibitors as well as altered organization of mitochondrial respiratory complexes have been reported in CS-B mouse cells (Osenbroch et al., 2009). Moreover, in human cells CSA and CSB localize to mitochondria and interact with mitochondrial BER proteins to protect from aging- and stress-induced mtDNA mutations and apoptosis-mediated loss of subcutaneous fat, a hallmark of aging (Kamenisch et al., 2010, Aamann et al., 2010). Recently, it was demonstrated that CS cells present an altered redox balance with increased steady-state levels of intracellular ROS and mitochondrial dysfunction (Pascucci et al., 2012, Scheibye-Knudsen et al., 2012). In addition, patient-derived CS-B deficient cells exhibited a defect in efficient mitochondrial transcript production and CSB specifically promoted elongation by the mitochondrial RNA polymerase in vitro (Berquist et al., 2012).
A large body of recent work on oxidative stress-related pathologies points to mitochondrial impairment as a central causative factor. Decreased activity of specific complexes of the electron transport chain (ETC), increased oxidatively generated damage, and altered activity of antioxidant defense enzymes have been shown in aging and neurodegenerative diseases (Beal, 2005, Van Houten et al., 2006). The hypothesis has been formulated that the neurodegeneration observed in CS patients might be aligned with that observed in other neurological disorders caused by dysfunctional mitochondria. In this model the well-established defect in transcription-coupled repair, which is the hallmark of CS cells, would account for the skin photosensitivity, while the key to developmental and neurological disease in CS is the loss of mitochondrial function upon oxidative stress (Cleaver, 2012).
In this review we will discuss the evidence that implicate CS proteins in the control of oxidative stress response and provide a working model of how defects in these proteins cause disease.
Section snippets
The redox balance: characterization and sources
ROS encompass a diverse range of species, including superoxide, hydrogen peroxide, nitric oxide, peroxynitrite, hypochlorous acid, singlet oxygen, and the hydroxyl radical. Each of these molecules represents a distinct chemical entity with its own reaction preferences, kinetics, rate and site of production, and degradation and diffusion characteristics in biological systems. Consequently the biological impacts of ROS depend critically on the particular molecule(s) involved and on the
Oxidative stress and effects on metabolism
There is now overwhelming evidence that cellular redox status impacts critical cellular processes and thus, cell fate decisions by affecting directly and/or indirectly lipid and protein components (Maillet and Pervaiz, 2012). As described in several diseases including neurodegenerative diseases, increased oxidative stress may lead to abnormalities in oxidative metabolism. An altered redox balance can lead to oxidation of susceptible cellular protein thiols, change the intracellular redox
The response to oxidative stress in CS cells: what is the contribution of unbalanced redox and metabolic reconfiguration?
ROS affect cellular responses through diverse mechanisms. At low levels, they are signaling molecules, and at high levels, they damage organelles, particularly mitochondria and biological macromolecules, such as DNA and RNA, triggering apoptosis and necrosis. The accumulation of oxidative DNA damage may lead to neurodegeneration (Barja, 2004). Several groups have reported accumulation of oxidative DNA damage in nuclear DNA in CS cells but less information is available regarding mtDNA. mtDNA is
Conclusions
The role of CSB and CSA proteins in TCR is well defined. When transcribing RNAPII stalls at the site of damage on the DNA template strand, CSB and CSA function as adaptors to assemble an NER complex (Fousteri et al., 2006, Laine and Egly, 2006). However, recent evidence indicate that this is not the mechanism underlying the developmental and neurological disease in CS. CSB and CSA are mutated also in a small number of people with photosensitivity, but no neurological disease (UV-sensitive
Acknowledgments
This work was supported by a grant of the Associazione Italiana per la Ricerca sul Cancro (AIRC) to ED and a grant of the Pennsylvania Department of Health, the PA CURE, to BVH.
References (93)
- et al.
Nox enzymes from fungus to fly to fish and what they tell us about Nox function in mammals
Free Radical Biology and Medicine
(2010) Free radicals and aging
Trends in Neurosciences
(2004)- et al.
Nox proteins in signal transduction
Free Radical Biology and Medicine
(2009) - et al.
The role of autophagy in mammalian development: cell makeover rather than cell death
Developmental Cell
(2008) - et al.
Cockayne syndrome exhibits dysregulation of p21 and other gene products that may be independent of transcription-coupled repair
Neuroscience
(2007) Cross talk between mitochondria and NADPH oxidases
Free Radical Biology and Medicine
(2011)- et al.
Defective repair of 5-hydroxy-2′-deoxycytidine in Cockayne syndrome cells and its complementation by Escherichia coli formamidopyrimidine DNA glycosylase and endonuclease III
Free Radical Biology and Medicine
(2010) - et al.
Cockayne syndrome A and B proteins differentially regulate recruitment of chromatin remodeling and repair factors to stalled RNA polymerase II in vivo
Molecular Cell
(2006) - et al.
Oxidants and not alkylating agents induce rapid mtDNA loss and mitochondrial dysfunction
DNA Repair (Amsterdam)
(2012) - et al.
A subgroup of spinocerebellar ataxias defective in DNA damage responses
Neuroscience
(2007)
Reactive oxygen species derived from the mitochondrial respiratory chain are not responsible for the basal levels of oxidative base modifications observed in nuclear DNA of Mammalian cells
Free Radical Biology and Medicine
p62/SQSTM1 is a target gene for transcription factor NRF2 and creates a positive feedback loop by inducing antioxidant response element-driven gene transcription
Journal of Biological Chemistry
Regulating mitochondrial outer membrane proteins by ubiquitination and proteasomal degradation
Current Opinion in Cell Biology
8-Oxoguanine DNA glycosylase (Ogg1) causes a transcriptional inactivation of damaged DNA in the absence of functional Cockayne syndrome B (Csb) protein
DNA Repair (Amsterdam)
Cockayne syndrome group B protein stimulates repair of formamidopyrimidines by NEIL1 DNA glycosylase
Journal of Biological Chemistry
Subcellular distribution of superoxide dismutases (SOD) in rat liver: Cu, Zn-SOD in mitochondria
Journal of Biological Chemistry
The cross talk between pathways in the repair of 8-oxo-7,8-dihydroguanine in mouse and human cells
Free Radical Biology and Medicine
Complementation of the oxidatively damaged DNA repair defect in Cockayne syndrome A and B cells by Escherichia coli formamidopyrimidine DNA glycosylase
Free Radical Biology and Medicine
Apoptosis induced by persistent single-strand breaks in the mitochondrial genome: critical role of EXOG (5′ EXO/Endonuclease) in their repair
Journal of Biological Chemistry
ROS, mitochondria and the regulation of autophagy
Trends in Cell Biology
Host cell reactivation of plasmids containing oxidative DNA lesions is defective in Cockayne syndrome but normal in UV-sensitive syndrome fibroblasts
DNA Repair (Amsterdam)
Suppression of reactive oxygen species and neurodegeneration by the PGC-1 transcriptional coactivators
Cell
A fraction of yeast Cu, Zn-superoxide dismutase and its metallochaperone, CCS, localize to the intermembrane space of mitochondria. A physiological role for SOD1 in guarding against mitochondrial oxidative damage
Journal of Biological Chemistry
Apoptosis induced by persistent single-strand breaks in mitochondrial genome: critical role of EXOG (5’-EXO/endonuclease) in their repair
Journal of Biological Chemistry
Role of nitric oxide in HIV-1 infection: friend or foe?
Lancet Infectious Diseases
The Cockayne syndrome group B gene product is involved in cellular repair of 8-hydroxyadenine in DNA
Journal of Biological Chemistry
The Cockayne syndrome group B gene product is involved in general genome base excision repair of 8-hydroxyguanine in DNA
Journal of Biological Chemistry
Mitochondrial dysfunction in ataxia-telangiectasia
Blood
Role of mitochondrial DNA in toxic responses to oxidative stress
DNA Repair (Amsterdam)
Thiol chemistry and specificity in redox signaling
Free Radical Biology and Medicine
Cockayne syndrome group B protein promotes mitochondrial DNA stability by supporting the DNA repair association with the mitochondrial membrane
FASEB Journal
Evidence for premature aging due to oxidative stress in iPSCs from Cockayne syndrome
Human Molecular Genetics
Quantitation and origin of the mitochondrial membrane potential in human cells lacking mitochondrial DNA
European Journal of Biochemistry
Regulation of autophagy by reactive oxygen species (ROS): implications for cancer progression and treatment
Antioxidants and Redox Signalling
Mitochondria take center stage in aging and neurodegeneration
Annals of Neurology
Human Cockayne syndrome B protein reciprocally communicates with mitochondrial proteins and promotes transcriptional elongation
Nucleic Acids Research
Aerobic glycolysis by proliferating cells: a protective strategy against reactive oxygen species
FASEB Journal
Photosensitivity syndrome brings to light a new transcription-coupled DNA repair cofactor
Nature Genetics
The role of CSA in the response to oxidative DNA damage in human cells
Oncogene
Resveratrol induces extensive apoptosis by depolarizing mitochondrial membranes and activating caspase-9 in acute lymphoblastic leukemia cells
Cancer Research
Free radicals in the physiological control of cell function
Physiological Reviews
CSB protein is (a direct target of HIF-1 and) a critical mediator of the hypoxic response
EMBO Journal
Oxidants, oxidative stress and the biology of ageing
Nature
Superoxide radical and superoxide dismutases
Annual Review of Biochemistry
Cockayne syndrome B protein (CSB): linking p53, HIF-1 and p300 to robustness, lifespan, cancer and cell fate decisions
Cell Cycle
Retinal degeneration and ionizing radiation hypersensitivity in a mouse model for Cockayne syndrome
Molecular and Cellular Biology
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Transcription coupled base excision repair in mammalian cells: So little is known and so much to uncover
2021, DNA RepairCitation Excerpt :Several studies have linked the TC-NER deficiency to developmental or neurodegenerative diseases, like Cockayne Syndrome (CS) (characterized by UV-sensitivity, neurological and progeriod symptoms) [60,63,70,71]. However, CS cells are sensitive to agents that induce oxidative DNA damage, such as γ-rays, hydrogen peroxide and potassium bromate [72] indicating deficiency in BER as well. Moreover, a transcription-dependent role of CSB in the repair of oxidative DNA damage was reported [73,74].
Transcription blockage by DNA damage in nucleotide excision repair-related neurological dysfunctions
2021, Seminars in Cell and Developmental BiologyCitation Excerpt :Cyclopurines, as well as malondialdehyde and ethylene adducts, are not only substrates for NER but have also been found to block transcription [56–60]. NER deficient cells have also been shown to be more sensitive to oxidizing agents such as hydrogen peroxide, potassium bromate, and photoactivated methylene blue [14,61–65]. CS proteins, in particular, are involved with the repair of several DNA lesions induced by oxidation [66], and augmented levels of 8-oxodGuo have been detected in cultured fibroblasts derived from CS-B patients, as well as in primary keratinocytes obtained from CS-A patients [67–69].
Human diseases associated with genome instability
2021, Genome Stability: From Virus to Human ApplicationCockayne Syndrome Type A Protein Protects Primary Human Keratinocytes from Senescence
2019, Journal of Investigative DermatologyCitation Excerpt :Important cellular similarities exist between some traits of CS and chronological aging, such as DNA repair dysfunction, oxidative DNA damage and γ-H2AX foci accumulation, impaired redox balance, mitochondrial dysfunction, chromatin remodeling defects, and transcription deregulation (Karikkineth et al., 2017; Pascucci et al., 2018). Indeed, CSA and CSB proteins are involved in both DNA repair and cell oxidative metabolism (D’Errico et al., 2013; Lanzafame et al., 2013). In addition, CSB contributes to the RNA polymerase II-mediated transcription through a crucial role in chromatin remodeling (Lake and Fan, 2013).
Two Cockayne Syndrome patients with a novel splice site mutation – clinical and metabolic analyses
2018, Mechanisms of Ageing and DevelopmentCitation Excerpt :The findings were confirmed with Trypan Blue exclusion, where 60% of the patient fibroblasts in culture died after a UV dose of 12 J/m2, whereas only 15% of the cells from the control culture died as a result of the UV irradiation (Fig. 3B). Increased levels of oxidative stress, measured as superoxide levels, were observed in the patient fibroblast cultures compared to the control cell line (Fig. S3), confirming previous findings in primary fibroblasts from CS patients (D’Errico et al., 2013). Metabolomic analyses using an untargeted approach identified a total of 160 known metabolites in the fibroblasts (Table S2).