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Spectrum of Phenotypes Associated with Mutations in LRBA

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Abstract

To date, several germline mutations have been identified in the LRBA gene in patients suffering from a variety of clinical symptoms. These mutations abolish the expression of the LRBA protein, leading to autoimmunity, chronic diarrhea, B-cell deficiency, hypogammaglobulinemia, functional T-cell defects and aberrant autophagy. We review the clinical and laboratory features of patients with LRBA mutations and present five novel mutations in eight patients suffering from a multitude of clinical features.

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References

  1. Buckley RH. Variable phenotypic expression of mutations in genes of the immune system. J Clin Invest. 2005;115(11):2974–6. doi:10.1172/JCI26956.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  2. Lopez-Herrera G, Tampella G, Pan-Hammarstrom Q, Herholz P, Trujillo-Vargas CM, Phadwal K, et al. Deleterious mutations in LRBA are associated with a syndrome of immune deficiency and autoimmunity. Am J Hum Genet. 2012;90(6):986–1001. doi:10.1016/j.ajhg.2012.04.015.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  3. Dyomin VG, Chaganti SR, Dyomina K, Palanisamy N, Murty VV, Dalla-Favera R, et al. BCL8 is a novel, evolutionarily conserved human gene family encoding proteins with presumptive protein kinase A anchoring function. Genomics. 2002;80(2):158–65.

    Article  PubMed  CAS  Google Scholar 

  4. Wu C, Orozco C, Boyer J, Leglise M, Goodale J, Batalov S, et al. BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources. Genome Biol. 2009;10(11):R130. doi:10.1186/gb-2009-10-11-r130.

    Article  PubMed  PubMed Central  Google Scholar 

  5. De Lozanne A. The role of BEACH proteins in Dictyostelium. Traffic. 2003;4(1):6–12.

    Article  PubMed  Google Scholar 

  6. Cullinane AR, Schaffer AA, Huizing M. The BEACH is hot: a LYST of emerging roles for BEACH-domain containing proteins in human disease. Traffic. 2013;14(7):749–66. doi:10.1111/tra.12069.

    Article  PubMed  CAS  Google Scholar 

  7. EnsemblGenomeBrowser. http://www.ensembl.org/Homo_sapiens/Transcript/Sequence_Protein?db=core;g=ENSG00000198589;r=4:151185594–151936879;t=ENST00000510413. 2015; accessed 11 April 2015.

  8. GeneCards. http://www.genecards.org/cgi-bin/carddisp.pl?gene=LRBA; accessed 1 July 2015.

  9. Wang JW, Gamsby JJ, Highfill SL, Mora LB, Bloom GC, Yeatman TJ, et al. Deregulated expression of LRBA facilitates cancer cell growth. Oncogene. 2004;23(23):4089–97. doi:10.1038/sj.onc.1207567.

    Article  PubMed  CAS  Google Scholar 

  10. Lo B, Zhang K, Lu W, Zheng L, Zhang Q, Kanellopoulou C, et al. Autoimmune disease. patients with LRBA deficiency show CTLA4 loss and immune dysregulation responsive to abatacept therapy. Science. 2015;349(6246):436–40. doi:10.1126/science.aaa1663.

    Article  PubMed  CAS  Google Scholar 

  11. Burns SO, Zenner HL, Plagnol V, Curtis J, Mok K, Eisenhut M, et al. LRBA gene deletion in a patient presenting with autoimmunity without hypogammaglobulinemia. J Allergy Clin Immunol. 2012;130(6):1428–32. doi:10.1016/j.jaci.2012.07.035.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  12. Alangari A, Alsultan A, Adly N, Massaad MJ, Kiani IS, Aljebreen A, et al. LPS-responsive beige-like anchor (LRBA) gene mutation in a family with inflammatory bowel disease and combined immunodeficiency. J Allergy Clin Immunol. 2012;130(2):481–8. doi:10.1016/j.jaci.2012.05.043. e2.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  13. Sjoblom T, Jones S, Wood LD, Parsons DW, Lin J, Barber TD, et al. The consensus coding sequences of human breast and colorectal cancers. Science. 2006;314(5797):268–74. doi:10.1126/science.1133427.

    Article  PubMed  Google Scholar 

  14. Seidel MG, Hirschmugl T, Gamez-Diaz L, Schwinger W, Serwas N, Deutschmann A. Long-term remission after allogeneic hematopoietic stem cell transplantation in LPS-responsive beige-like anchor (LRBA) deficiency. J Allergy Clin Immunol. 2015;135(5):1384–90. doi:10.1016/j.jaci.2014.10.048. e1-8.

    Article  PubMed  PubMed Central  Google Scholar 

  15. Serwas NK, Kansu A, Santos-Valente E, Kuloglu Z, Demir A, Yaman A, et al. Atypical manifestation of LRBA deficiency with predominant IBD-like phenotype. Inflamm Bowel Dis. 2015;21(1):40–7. doi:10.1097/MIB.0000000000000266.

    Article  PubMed  Google Scholar 

  16. Charbonnier LM, Janssen E, Chou J, Ohsumi TK, Keles S, Hsu JT, et al. Regulatory T-cell deficiency and immune dysregulation, polyendocrinopathy, enteropathy, X-linked-like disorder caused by loss-of-function mutations in LRBA. J Allergy Clin Immunol. 2015;135(1):217–27. doi:10.1016/j.jaci.2014.10.019.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  17. Lopez-Herrera G, Berron Ruiz L, Mogica Martinez D, Yamazaki Nakashimada MA, Segura-Mendez NH, Santos Argumedo L, et al. LRBA deficiency in Mexican patients with common variable immunodeficiency. J Clin Immunol. 2014;34(2):S412–3.

    Google Scholar 

  18. Dogu F, Haskologlu S, Dalgic B, Dur O, Kuloglu Z, Kansu A, et al. Hematopoetic stem cell transplantation for LRBA deficiency. J Clin Immunol. 2014;34(2):S280.

    Google Scholar 

  19. Piquer M, de Valles G, González E, Esteve A, Martín-Mateos MA, Aróstegui JI, et al. New LRBA-mutation in a patient with severe reduction in IgG, IgM and IgA with normal number of B-cells at diagnosis and previously classified as CVID. J Clin Immunol. 2014;34(2):S419.

    Google Scholar 

  20. Revel-Vilk S, Fischer U, Keller B, Nabhani S, Gamez-Diaz L, Rensing-Ehl A, et al. Autoimmune lymphoproliferative syndrome-like disease in patients with LRBA mutation. Clin Immunol. 2015;159(1):84–92. doi:10.1016/j.clim.2015.04.007.

    Article  PubMed  CAS  Google Scholar 

  21. Cheraghi T, Aghamohammadi A, Mirminachi B, Keihanian T, Hedayat E, Abolhassani H, et al. Prediction of the evolution of common variable immunodeficiency: HLA typing for patients with selective IgA deficiency. J Investig Allergol Clin Immunol. 2014;24(3):198–200.

    PubMed  CAS  Google Scholar 

  22. Abolhassani H, Parvaneh N, Rezaei N, Hammarstrom L, Aghamohammadi A. Genetic defects in B-cell development and their clinical consequences. J Investig Allergol Clin Immunol. 2014;24(1):6–22. quiz 2 p following.

    PubMed  CAS  Google Scholar 

  23. Funayama Y, Sasaki I, Naito H, Tsuchiya T, Takahashi M, Koyama K, et al. Psoas abscess complicating Crohn’s disease: report of two cases. Surg Today. 1996;26(5):345–8.

    Article  PubMed  CAS  Google Scholar 

  24. Arandi N, Mirshafiey A, Abolhassani H, Jeddi-Tehrani M, Edalat R, Sadeghi B, et al. Frequency and expression of inhibitory markers of CD4(+) CD25(+) FOXP3(+) regulatory T cells in patients with common variable immunodeficiency. Scand J Immunol. 2013;77(5):405–12. doi:10.1111/sji.12040.

    Article  PubMed  CAS  Google Scholar 

  25. Patey-Mariaud de Serre N, Canioni D, Ganousse S, Rieux-Laucat F, Goulet O, Ruemmele F, et al. Digestive histopathological presentation of IPEX syndrome. Mod Pathol. 2009;22(1):95–102. doi:10.1038/modpathol.2008.161.

    Article  PubMed  CAS  Google Scholar 

  26. Uhlig HH, Coombes J, Mottet C, Izcue A, Thompson C, Fanger A, et al. Characterization of Foxp3+CD4+CD25+ and IL-10-secreting CD4+CD25+ T cells during cure of colitis. J Immunol. 2006;177(9):5852–60.

    Article  PubMed  CAS  Google Scholar 

  27. Choi AM, Ryter SW, Levine B. Autophagy in human health and disease. N Engl J Med. 2013;368(19):1845–6. doi:10.1056/NEJMc1303158.

    Article  PubMed  CAS  Google Scholar 

  28. Pengo N, Cenci S. The role of autophagy in plasma cell ontogenesis. Autophagy. 2013;9(6):942–4. doi:10.4161/auto.24399.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  29. Pengo N, Scolari M, Oliva L, Milan E, Mainoldi F, Raimondi A, et al. Plasma cells require autophagy for sustainable immunoglobulin production. Nat Immunol. 2013;14(3):298–305. doi:10.1038/ni.2524.

    Article  PubMed  CAS  Google Scholar 

  30. Qu X, Yu J, Bhagat G, Furuya N, Hibshoosh H, Troxel A, et al. Promotion of tumorigenesis by heterozygous disruption of the beclin 1 autophagy gene. J Clin Invest. 2003;112(12):1809–20. doi:10.1172/JCI20039.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  31. Hampe J, Franke A, Rosenstiel P, Till A, Teuber M, Huse K, et al. A genome-wide association scan of nonsynonymous SNPs identifies a susceptibility variant for Crohn disease in ATG16L1. Nat Genet. 2007;39(2):207–11. doi:10.1038/ng1954.

    Article  PubMed  CAS  Google Scholar 

  32. Schubert D, Bode C, Kenefeck R, Hou TZ, Wing JB, Kennedy A, et al. Autosomal dominant immune dysregulation syndrome in humans with CTLA4 mutations. Nat Med. 2014;20(12):1410–6. doi:10.1038/nm.3746.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

  33. Kuehn HS, Ouyang W, Lo B, Deenick EK, Niemela JE, Avery DT, et al. Immune dysregulation in human subjects with heterozygous germline mutations in CTLA4. Science. 2014;345(6204):1623–7. doi:10.1126/science.1255904.

    Article  PubMed  CAS  PubMed Central  Google Scholar 

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Contribution

O.K. and H.A. performed experiments, analyzed results, made the figures, and wrote the paper; M.F. analyzed results; K.K., M.M, and J.C. performed experiments and analyzed results; H.A., Z.C., I.M., and M.E. performed clinical sampling and; A.A., N.R., R.G. and L.H. designed the research and edited the paper.

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Corresponding author

Correspondence to Lennart Hammarström.

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Financial Resources

This work was supported by the Jeffrey Modell Foundation and the Swedish Research Council.

Conflict of Interest

The authors declare no competing financial interests.

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Supplementary Table 1

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Supplementary Table 2

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Supplementary Table 3

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Supplementary Table 4

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Supplementary Table 5

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Supplementary Table 6

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Multiple Choice Questions

Multiple Choice Questions

Somatic mutations in LRBA have been linked to:

  1. 1.

    Chronic diarrhea

  2. 2.

    Immune thrombocytopenic purpura

  3. 3.

    Autoimmune hemolytic anemia

  4. 4.

    Breast cancer

  5. 5.

    Hypogammaglobulinemia

In LRBA deficiency, B-cell characteristics most commonly include:

  1. 1.

    An increased proportion of switched memory B-cells

  2. 2.

    A decreased proportion of switched memory B-cells

  3. 3.

    Normal autophagic function

  4. 4.

    Normal B-cell proliferation

  5. 5.

    Normal B-cell differentiation

Regarding mutations resulting in LRBA, which of the following statments is correct:

  1. 1.

    Only fragment deletions result in LRBA deficiency

  2. 2.

    Only nonsense mutations result in LRBA deficiency

  3. 3.

    Only mutations in exon 30 result in LRBA deficiency

  4. 4.

    Multiple mutations are necessary to result in LRBA deficiency

  5. 5.

    A single homozygous mutation may result in LRBA deficiency

LRBA is a:

  1. 1.

    Cell-surface receptor protein

  2. 2.

    Expressed in lymphoid cells only

  3. 3.

    Expressed in neural cells only

  4. 4.

    Expressed in B-cells only

  5. 5.

    Cytosolic protein

Regarding plasma cells, which of the following is correct :

  1. 1.

    Do not have autophagic activity

  2. 2.

    Have high autophagic activity

  3. 3.

    Lose their endoplasmic reticula during differentiation

  4. 4.

    Do not express autophagy-related proteins

  5. 5.

    Have a very low level of autophagy substrate SQSTM1 protein

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Alkhairy, O.K., Abolhassani, H., Rezaei, N. et al. Spectrum of Phenotypes Associated with Mutations in LRBA . J Clin Immunol 36, 33–45 (2016). https://doi.org/10.1007/s10875-015-0224-7

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  • DOI: https://doi.org/10.1007/s10875-015-0224-7

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