Skip to main content
Log in

Microarrays as a diagnostic tool in prenatal screening strategies: ethical reflection

  • Original Investigation
  • Published:
Human Genetics Aims and scope Submit manuscript

Abstract

Genomic microarray analysis is increasingly being applied as a prenatal diagnostic tool. Microarrays enable searching the genome at a higher resolution and with higher sensitivity than conventional karyotyping for identifying clinically significant chromosomal abnormalities. As yet, no clear guidelines exist on whether microarrays should be applied prenatally for all indications or only in selected cases such as ultrasound abnormalities, whether a targeted or genome-wide array should be used, and what these should include exactly. In this paper, we present some ethical considerations on the prenatal use of microarrays. There is a strong consensus, at least in Western countries, that the aim of prenatal screening for foetal abnormalities should be understood as facilitating autonomous reproductive choice for prospective parents. The tests offered should be valid and useful to reach that purpose. Against this background, we address several ethical issues raised by the prenatal application of microarrays. First, we argue that the general distinction between a targeted and a genome-wide microarray needs to be scrutinised. Then we examine whether microarrays are ‘suitable tests’ to serve either a screening or a diagnostic purpose. Given the wide range of findings possibly generated by microarrays, the question arises whether microarrays actually promote or interfere with autonomous reproductive decision-making. Moreover, if variants of unknown clinical significance are identified, this adds to the burden and complexity of reproductive decision-making. We suggest a qualified use of microarrays in the prenatal context.

This is a preview of subscription content, log in via an institution to check access.

Access this article

Price excludes VAT (USA)
Tax calculation will be finalised during checkout.

Instant access to the full article PDF.

Similar content being viewed by others

References

  • ACOG (2009) Array comparative genomic hybridization in prenatal diagnosis. Committee Opinion Number 446. Obstet Gynecol 114:5

    Google Scholar 

  • Alesi V, Bertoli M, Sinibaldi L, Novelli A (2013) The clinical utility and indications of chromosomal microarray analysis in prenatal diagnosis. BJOG 120:119–120

    Article  CAS  PubMed  Google Scholar 

  • American College of Medical Quality (2011) Professional and ethical policies of the American College of Medical Quality, Policy 3. Standard of care; Policy 8. Definition and application of medical necessity. http://www.acmq.org/policies/policy8.pdf

  • Armengol L, Nevado J, Serra-Juhé C, Plaja A, Mediano C, García-Santiago F et al (2012) Clinical utility of chromosomal microarray analysis in invasive prenatal diagnosis. Hum Genet 131:513–523

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Bassem A, Bejjani B, Shaffer L (2006) Targeted array CGH. J Mol Diagn 8:537–539

    Article  Google Scholar 

  • Beauchamp TL, Childress JF (2009) Principles of biomedical ethics. Oxford University Press Inc, Oxford

    Google Scholar 

  • Bejjani B, Shaffer L (2006) Application of array-based comparative genomic hybridization to clinical diagnostics. Mol Diagn 8:528–533

    CAS  Google Scholar 

  • Bernhardt B, Soucier D, Hanson K, Savage M, Jackson L, Wapner R (2013) Women’s experiences receiving abnormal prenatal chromosomal microarray testing results. Genet Med 15:139–145

    Article  PubMed  Google Scholar 

  • Cavalli P, Cavallari U, Novelli A (2012) Array CGH in routine prenatal diagnosis practice. Prenat Diagn 32:708–709

    Article  PubMed  Google Scholar 

  • Choy K, Setlur S, Lee C, Lau T (2010) The impact of human copy number variation on a new era of genetic testing. BJOG 117:391–398

    Article  CAS  PubMed  Google Scholar 

  • Coppinger J, Alliman S, Lamb A, Torchia B, Bejjani B, Shaffer L (2009) Whole-genome microarray analysis in prenatal specimens identifies clinically significant chromosome alterations without increase in results of unclear significance compared to targeted microarray. Prenat Diagn 29:1156–1166

    Article  PubMed  Google Scholar 

  • D’Amours G, Kibar Z, Mathonnet G, Fetni R, Tihy F, Désilets V, Nizard S, Michaud JL, Lemyre E (2012) Whole-genome array CGH identifies pathogenic copy number variations in fetuses with major malformations and a normal karyotype. Clin Genet 81:128–141

    Article  PubMed  Google Scholar 

  • de Jong A, Dondorp W, Frints S, de Die-Smulders C, de Wert G (2011a) Advances in prenatal screening: the ethical dimension. Nat Rev Genet 12:657–663

    Article  PubMed  Google Scholar 

  • de Jong A, Dondorp W, Timmermans D, van Lith J, de Wert G (2011b) Rapid aneuploidy detection or karyotyping? Ethical reflection. Eur J Hum Genet 19:1020–1025

    Article  PubMed  Google Scholar 

  • de Wit M, Srebniak M, Govaerts L, Van Opstal D, Galjaard R, Go A (2013) The additional value of prenatal genomic array testing in fetuses with (isolated) structural ultrasound abnormalities and a normal karyotype: a systematic review of the literature. Ultrasound Obstet Gynecol. doi:101002/uog125752013

    PubMed  Google Scholar 

  • Dondorp W, Sikkema-Raddatz B, de Die-Smulders C, de Wert G (2012) Arrays in postnatal and prenatal diagnosis: an exploration of the ethics of consent. Hum Mutat 33:916–922

    Article  PubMed  Google Scholar 

  • Edelmann L, Hirschhorn K (2009) Clinical utility of array CGH for the detection of chromosomal imbalances associated with mental retardation and multiple congenital anomalies. N Y Acad Sci 1151:157–166

    Article  Google Scholar 

  • Emanuel E, Emanuel L (1992) Four models of the physician-patient relationship. JAMA 267:2221–2226

    Article  CAS  PubMed  Google Scholar 

  • Faas B, van der Burgt I, Kooper A, Pfundt R, Hehir-Kwa J, Smits A et al (2010) Identification of clinically significant, submicroscopic chromosome alterations and UPD in fetuses with ultrasound anomalies using genome-wide 250 k SNP array analysis. J Med Genet 47:586–594

    Article  CAS  PubMed  Google Scholar 

  • Faas BHW, Cirigliano V, Bui T-H (2011) Rapid methods for targeted prenatal diagnosis of common chromosome aneuploidies. Sem Fet Neonat Med 16:81–87

    Article  Google Scholar 

  • Fiorentino F, Napoletano S, Caiazzo F, Sessa M, Bono S, Spizzichino L, Gordon A, Nuccitelli A, Rizzo G, Baldi M (2013) Chromosomal microarray analysis as a first-line test in pregnancies with a priori low risk for the detection of submicroscopic chromosomal abnormalities. Eur J Hum Genet 21:725–730

    Article  CAS  PubMed  Google Scholar 

  • Fruhman G, van den Veyver I (2010) Applications of array comparative genomic hybridization in obstetrics. Obstet Gynecol Clin North Am 37:71–85

    Article  PubMed  Google Scholar 

  • Ganesamoorthy D, Bruno DL, McGillivray G, Norris F, White SM, Adroub S, Amor DJ, Yeung A, Oertel R, Pertile MD, Ngo C, Arvaj AR, Walker S, Charan P, Palma-Dias R, Woodrow N, Slater HR (2013) Meeting the challenge of interpreting high-resolution single nucleotide polymorphism array data in prenatal diagnosis: does increased diagnostic power outweigh the dilemma of rare variants? BJOG 120:594–606

    Article  CAS  PubMed  Google Scholar 

  • Health Council of the Netherlands (2008) Screening: between hope and hype. Publication no. 2008/05

  • Hillman S, Pretlove S, Coomarasamy A, McMullan D, Davison E, Maher E et al (2011) Additional information from array comparative genomic hybridization technology over conventional karyotyping in prenatal diagnosis: a systematic review and meta-analysis. Ultrasound Obstet Gynecol 37:6–14

    Article  CAS  PubMed  Google Scholar 

  • Hillman S, McMullan D, Maher E, Kilby M (2012) Clinical utility of array comparative genomic hybridisation for prenatal diagnosis: a cohort study of 3171 pregnancies. BJOG 119:1281–1282

    Article  CAS  PubMed  Google Scholar 

  • Javaher P, Schmidtke J (2010) Clinical validity and utility of genetic testing in heritable disorders. In: Kristofferson U, Schmidtke J, Cassiman J-J (eds) Quality issues in clinical genetic services. Springer, Dordrecht, pp 147–156

    Chapter  Google Scholar 

  • Kitzman JO, Snyder MW, Ventura M, Lewis AP, Qiu R, Simmons LE et al (2012) Noninvasive whole-genome sequencing of a human fetus. Sci Transl Med 4:137ra176

    Article  Google Scholar 

  • Kleeman L, Bianchi D, Shaffer L, Rorem E, Cowan J, Craigo S et al (2009) Use of array comparative genomic hybridization for prenatal diagnosis of fetuses with sonographic anomalies and normal metaphase karyotype. Prenat Diagn 29:1213–1217

    Article  PubMed  Google Scholar 

  • Le Caignec C, Boceno M, Saugier-Veber P, Jacquemont S, Joubert M, David A et al (2005) Detection of genomic imbalances by array based comparative genomic hybridisation in fetuses with multiple malformations. J Med Genet 42:121–128

    Article  PubMed  Google Scholar 

  • Leung T, Vogel I, Lau T, Hyett J, Petersen O et al (2011) Identification of submicroscopic chromosomal aberrations in fetuses with increased nuchal translucency and apparently normal karyotype. Ultrasound Obstet Gynecol 38:314–319

    Article  CAS  PubMed  Google Scholar 

  • Maya I, Davidov B, Gershovitz L, Zalzstein Y, Taub E, Coppinger J et al (2010) Diagnostic utility of array-based comparative genomic hybridization (aCGH) in a prenatal setting. Prenat Diagn 30:1131–1137

    Article  PubMed  Google Scholar 

  • McGillivray G, Rosenfield J, McKinlay Gardner R, Dillam L (2012) Genetic counselling and ethical issues with chromosome microarray analysis in prenatal testing. Prenat Diagn 32:389–395

    Article  PubMed  Google Scholar 

  • Miller D, Adam M, Aradhya S, Biesecker L, Brothman A, Carter N et al (2010) Consensus statement: chromosomal microarray is a first-tier clinical diagnostic test for individuals with developmental disabilities or congenital anomalies. Am J Hum Genet 14:749–764

    Article  Google Scholar 

  • Novelli A, Grati F, Ballarati L, Bernardini L, Bizzoco D, Camurri L et al (2012) Microarray application in prenatal diagnosis: a position statement from the cytogenetics working group of the Italian Society of Human Genetics (SIGU). Ultrasound Obstet Gynecol 39:384–388

    Article  CAS  PubMed  Google Scholar 

  • Park J, Woo J, Shim S, Yang S, Choi Y, Yang K et al (2010) Application of a target array comparative genomic hybridization to prenatal diagnosis. BMC Med Genet 11:102

    Article  PubMed Central  PubMed  Google Scholar 

  • Park S-J, Jung E, Ryu R-S, Kang H, Ko J-M, Kim H et al (2011) Clinical implementation of whole-genome array CGH as a first-tier test in 5080 pre and postnatal cases. Mol Cytogenet 4:12

    Article  PubMed Central  PubMed  Google Scholar 

  • Rehm H (2013) Disease-targeted sequencing: a cornerstone in the clinic. Nat Rev Genet 14:295–300

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Reiff M, Ross K, Mulchandani S, Propert K, Pyeritz R, Spinner N et al (2012) Physicians’ perspectives on the uncertainties and implications of chromosomal microarray testing of children and families. Clin Genet 83:23–30

    Article  PubMed Central  PubMed  Google Scholar 

  • Salomon L, Alfirevic Z, Berghella V, Bilardo C, Hernandez-Andrade E, Johnsen S et al (2011) Practice guidelines for performance of the routine mid-trimester fetal ultrasound scan. Ultrasound Obstet Gynecol 37:116–126

    Article  CAS  PubMed  Google Scholar 

  • Savage M, Mourad M, Wapner R (2011) Evolving applications of microarray analysis in prenatal diagnosis. Current Op Obstet Gynecol 23:103–108

    Article  Google Scholar 

  • Scott F, Murphy K, Carey L, Greville W, Mansfield N, Barahona P et al (2013) Prenatal diagnosis using combined quantitative fluorescent polymerase chain reaction and array comparative genomic hybridization analysis as a first-line test: results from over 1000 consecutive cases. Ultrasound Obstet Gynecol 41:500–507

    Article  CAS  PubMed  Google Scholar 

  • Shaffer L, Kashork C, Saleki R, Rorem E, Sundin K, Ballif B et al (2006) Targeted genomic microarray analysis for identification of chromosome abnormalities in 1500 consecutive clinical cases. J Pediatrics 149:98–102

    Article  CAS  Google Scholar 

  • Shaffer LG, Coppinger J, Alliman S, Torchia BA, Theisen A, Ballif BC et al (2008) Comparison of microarray-based detection rates for cytogenetic abnormalities in prenatal and neonatal specimens. Prenat Diagn 28:789–795

    Article  PubMed  Google Scholar 

  • Shaffer L, Dabell M, Fisher A, Coppinger J, Bandholz A, Ellison J et al (2012) Experience with microarray-based comparative genomic hybridization for prenatal diagnosis in over 5000 pregnancies. Prenat Diagn 32:976–985

    Article  PubMed Central  PubMed  Google Scholar 

  • Sonek J (2007) First trimester ultrasonography in screening and detection of fetal anomalies. Am J Med Genet C Semin Med Genet 145C(1):45–61

    Article  PubMed  Google Scholar 

  • Srebniak M, Boter M, Oudesluijs G, Cohen-Overbeek T, Govaerts L, Diderich K et al (2012) Genomic SNP array as a gold standard for prenatal diagnosis of foetal ultrasound abnormalities. Mol Cytogenet 5:14

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Srinivasan A, Bianchi D, Huang H, Sehnert A, Rava R (2013) Noninvasive detection of fetal subchromosome abnormalities via deep sequencing of maternal plasma. Am J Hum Genet 92:167–176

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Stankiewicz P, Beaudet A (2007) Use of array CGH in the evaluation of dysmorphology, malformations, developmental delay, and idiopathic mental retardation. Curr Opin Genet Dev 17:182–192

    Article  CAS  PubMed  Google Scholar 

  • Tyreman M, Abbott K, Willatt L, Nash R, Lees C, Whittaker J et al (2009) High resolution array analysis: diagnosing pregnancies with abnormal ultrasound findings. J Med Genet 46:531–541

    Article  CAS  PubMed  Google Scholar 

  • UK NSC (2007) National Screening Committee and NHS antenatal and newborn screening programmes. Antenatal screening—working standards for down’s syndrome screening 2007. National down’s syndrome screening programme for England

  • Van den Veyver I, Patel A, Shaw C, Pursley A, Kang S, Simovich M et al (2009) Clinical use of array comparative genomic hybridization (aCGH) for prenatal diagnosis in 300 cases. Prenat Diagn 29:29–39

    Article  PubMed Central  PubMed  Google Scholar 

  • Veltman J, de Vries B (2006) Diagnostic genome profiling: unbiased whole genome or targeted analysis? J Mol Diagn 8:534–537

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Vermeesch JR, Fiegler H, de Leeuw N, Szuhai K, Schoumans J, Ciccone R et al (2007) Guidelines for molecular karyotyping in constitutional genetic diagnosis. Eur J Hum Genet 15:1105–1114

    Article  CAS  PubMed  Google Scholar 

  • Vetro A, Bouman K, Hastings R, McMullan D, Vermeesch JR, Miller K et al (2012) The introduction of arrays in prenatal diagnosis: a special challenge. Hum Mutat 33:923–929

    Article  PubMed  Google Scholar 

  • Wapner R, Driscoll D, Simpson J (2012a) Integration of microarray technology into prenatal diagnosis: counselling issues generated during the NICHD clinical trial. Prenat Diagn 32:396–400

    Article  PubMed  Google Scholar 

  • Wapner R, Martin C, Levy B, Ballif B, Eng C, Zachary J et al (2012b) Chromosomal microarray versus karyotyping for prenatal diagnosis. N Engl J Med 367:2175–2184

    Article  CAS  PubMed Central  PubMed  Google Scholar 

  • Wilfond B, Nolan K (1993) National policy development for the clinical application of genetic diagnostic technologies. Lessons from cystic fibrosis. JAMA 270:2948–2954

    Article  CAS  PubMed  Google Scholar 

  • Wilson J, Jungner G (1968) Principles and practice of screening for disease. World Health Organisation, Geneve

    Google Scholar 

  • Zuffardi O, Vetro A, Brady P, Vermeesch J (2011) Array technology in prenatal diagnosis. Semin Fetal Neonatal Med 16:94–98

    Article  PubMed  Google Scholar 

Download references

Acknowledgments

This research was supported by the CSG Centre for Society and the Life Sciences, funded by The Netherlands Genomics Initiative (Project number: 70.1.061b).

Author information

Authors and Affiliations

Authors

Corresponding author

Correspondence to Antina de Jong.

Rights and permissions

Reprints and permissions

About this article

Cite this article

de Jong, A., Dondorp, W.J., Macville, M.V.E. et al. Microarrays as a diagnostic tool in prenatal screening strategies: ethical reflection. Hum Genet 133, 163–172 (2014). https://doi.org/10.1007/s00439-013-1365-5

Download citation

  • Received:

  • Accepted:

  • Published:

  • Issue Date:

  • DOI: https://doi.org/10.1007/s00439-013-1365-5

Keywords

Navigation