Table 1

Ultrarare variants shared by the affected exome or genome-sequenced individuals

Genomic locationEffect in transcript 1Protein effectGene/Protein nameSegregationProtein effect prediction*
NC_000001.10:g.223983870C>GNM_005426.2:c.1984G>CNP_005417.1:p.(Val662Leu)Tumour protein p53 binding protein 2 (TP53BP2)NoBenign
NC_000005.9:g.170305249dupNM_022897.4:c.165+2dupNP_075048.1:p.?RAN binding protein 17 (RANBP17)NoUncertain (splice site insertion)
NC_000009.11:g.6880032A>GNM_015061.4:c.650A>GNP_055876.2:p.(His217Arg)Lysine (K)-specific demethylase 4C (KDM4C)YesPathogenic
NC_000012.11:g.124915216C>TNM_006312.5:c.1000G>ANP_006303.4:p.(Glu334Lys)Nuclear receptor corepressor 2 (NCOR2)NoPathogenic
  • *Protein effect prediction is based on multiple prediction tools used in VarSome search engine. Pathogenic=the majority of tools give damaging/pathogenic/deleterious prediction.