Table 1

Chromosomal fragments involved in the rearrangement

ChromosomeFragmentFragment position (hg38)Size (bp)Genes affectedPutative function
StartEnd
chr 5A110 310 618111 651 6191 341 001STARD4-AS1; NR_040093.1Lnc-RNA
B111 651 620111 758 049106 429STARD4-AS1; NR_040093.1
C111 758 050112 157 589399 539NREP; NM_004772.4Neuronal function, cell migration
D112 157 590112 158 504914
E112 158 505112 164 0895584EPB41L4A; NM_022140.5Cytoskeleton–membrane interaction
F112 164 090112 169 8575767EPB41L4A; NM_022140.5
G112 169 858112 428 316258 458EPB41L4A; NM_022140.5
H112 428 345112 714 041285 696APC; NM_000038.6WNT/b-catenin signalling, tumour suppressor
I112 714 051113 035 528321 477APC; NM_000038.6
J113 035 607113 417 732382 125MCC; NM_001085377.2WNT/b-catenin signalling, tumour suppressor
K113 417 733113 426 1678434MCC; NM_001085377.2
L113 426 215113 429 6713456MCC; NM_001085377.2
M113 429 662113 851 075421 413MCC; NM_001085377.2
N113 851 076114 192 054340 978KCNN2; NM_021614.4Potassium channel
chr 10Insertion site67 598 33267 598 333CTNNA3; NM_013266.4Cell–cell adhesion, b-catenin binding