Table 2

Variants defined as pathogenic

Types of variantsReported (Class 1)Not reported (Class 2)Total
Putative deleterious variants
 Stop gain315283
 Stop loss022
 Frameshift insertion51823
 Frameshift deletion194059
 Frameshift indel011
 Canonical splice site variant71926
Non-functionally deleterious variants
 Missense150150
 Non-frameshift deletion22
 Non-canonical splice site variants33
 Synonymous variant11
Total218132350
  • The pathogenic variants were defined if the variant was putative deleterious or registered as pathogenic in the Human Gene Mutation Database or ClinVar database, and the minor allele frequency in any ethnic population was ≤0.5% in recessive genes or ≤0.01% in dominant genes using various population-based databases.