SNP | Populations and reference | Allele | Position | Risk allele frequency* | Forward and reverse primer sequence for SNaPshot multiplex PCR | ||
---|---|---|---|---|---|---|---|
Allele | CEU | CHB | |||||
rs965513 | European,9 11 13 Chernobyl10 and Japanese12 | A/G | 9q22.33 | A | 0.367 | 0.109 | GTGGAAGGGCCAGTGTATTGGAAGTCT & GCTACCATGTGAAGAAGTACGTGTTGGC |
rs944289 | European9 11 and Japanese12 | C/T | 14q13.3 | T | 0.602 | 0.449 | CCAGACTTGGACTGAGCCGTGCTAA & ACACTGGCAGAAAAGCACGTCTCCC |
rs116909374 | European13 | C/T | 14q13.3 | T | 0.050 | 0 | ACTCTGCATTAGTGGCTAACCTCCTGGT & TCTCCAGCTCAAGTGGGCCTGTCT |
rs2439302 | European13 | C/G | 8p12 | G | 0.465 | 0.150 | CCCCACTACTCCTTTGCCTTCCGTC & CTGTTCCTGAGTCATCTGGAGTTCCCTG |
rs966423 | European13 | C/T | 2q35 | C | 0.456 | 0.770 | CAGCCTTTCATCCAGCAGGACAACAG & TCCACTGGGCGTCTCAACTACAATCTG |
rs6983267 | European6 11 14 | G/T | 8q24 | G | 0.487 | 0.394 | CCACTTCCACAGCCCTCCAGCATTT & GGAAACTGAACTGTGGGGTTGGCTG |
*Risk alleles were summarised from HapMap Data Phase III/Rel#3. CEU: Utah residents with Northern and Western European ancestry from Centre d'Etude du Polymorphisme Humain collection. CHB: Han Chinese in Beijing, China.