Selected annotation tasks from the wANNOVAR server
| Type | Column | Description |
| Gene annotation | Variant function | Exonic, intronic, intergenic, UTR, etc |
| Gene | Impacted gene or neighbouring gene (with distance) | |
| Exonic variant function | Non-synonymous, synonymous, stopgain, etc | |
| AAChange | mRNA and amino acid change for coding variants | |
| Variation databases | ESP5400_ALL | Allele frequency in 5400 NHLBI-ESP exomes |
| 1000G_ALL | Allele frequency in 1000 Genomes Project (currently, version 2012 Feb) | |
| dbSNP | dbSNP identifier (currently, version 135) | |
| Functional prediction | AVSIFT | Base-level SIFT scores |
| LJB_SIFT | 1-SIFT scores and predictions (D: damaging, T: tolerated) | |
| LJB_PolyPhen2 | PolyPhen 2 scores and predictions (D: probably damaging; P: possibly damaging; B: bening) | |
| LJB_LRT | LRT scores and predictions (D: deleterious; N: neutral; U: unknown) | |
| LJB_MutationTaster | MutationTaster scores and predictions (A: disease_causing_automatic; D: disease_causing; N: polymorphism; P: polymorphism_automatic) | |
| LJB_PhyloP | PhyloP conservation scores and predictions (C: conserved, N: non-conserved) | |
| GERP++ | GERP++ scores for exonic variants | |
| Region annotation | Conserved | Region-level phastCons LOD scores |
| SegDup | Located in segmental duplication region and the sequence identity score |