Table 2

Fine mapping results in all samples for the Chr 13q linkage peak

Chr	SNP	Position	191 cases and 225 controls				715 complete trios				Combined analysis
Chr	SNP	Position	F_A	F_U	p Value	OR	T	U	p Value	OR	p Value	OR	95% CI
13	rs2274407	94657036	0.087	0.064	0.22	1.38	120	93	0.064	1.29	0.028	1.31	1.03 to 1.66
13	rs11568658	94661009	0.029	0.013	0.11	2.22	39	62	0.022	0.63	0.12	0.75	0.52 to 1.08
13	rs4148437	94697355	0.36	0.35	0.83	1.03	278	296	0.45	0.94	0.59	0.96	0.83 to 1.11
13	rs9556466	94698072	0.36	0.34	0.64	1.07	278	284	0.80	0.98	0.98	1.00	0.87 to 1.16
13	rs4148434	94701436	0.39	0.36	0.35	1.15	301	325	0.34	0.93	0.74	0.98	0.85 to 1.12
13	rs9590218	94704300	0.19	0.17	0.54	1.12	201	211	0.62	0.95	0.88	0.99	0.83 to 1.17
13	rs12584649	94705086	0.19	0.17	0.57	1.11	203	206	0.88	0.99	0.89	1.01	0.85 to 1.20
13	rs7321807	94706712	0.034	0.011	0.022	3.17	41	36	0.57	1.14	0.17	1.34	0.89 to 2.02
13	rs9561820	94708300	0.013	0.004	0.17	3.00	39	47	0.39	0.83	0.61	0.90	0.60 to 1.36
13	rs7320375	94709934	0.058	0.018	0.0021	3.38	71	40	0.0033	1.78	8.8×10⁻⁵	2.00	1.41 to 2.83
13	rs4148433	94710538	0.032	0.011	0.037	2.92	41	35	0.49	1.17	0.16	1.35	0.89 to 2.04
13	rs7986087	94713746	0.052	0.018	0.0058	3.05	68	38	0.0036	1.79	3.0×10⁻⁴	1.98	1.38 to 2.83
13	rs7329490	94714754	0.042	0.018	0.035	2.45	69	39	0.0039	1.77	5.8×10⁻⁴	1.87	1.31 to 2.68
13	rs4148427	94723675	0.041	0.016	0.028	2.66	42	36	0.50	1.17	0.12	1.37	0.92 to 2.05
13	rs4773867	94728621	0.15	0.11	0.060	1.48	167	147	0.26	1.14	0.066	1.20	0.99 to 1.46
13	rs9524885	94733590	0.30	0.25	0.12	1.28	267	255	0.60	1.05	0.21	1.10	0.95 to 1.28
13	rs4773872	94737932	0.22	0.15	0.012	1.57	181	191	0.60	0.95	0.42	1.08	0.90 to 1.28
13	rs871052	94748741	0.44	0.41	0.43	1.12	337	298	0.12	1.13	0.084	1.13	0.98 to 1.29
13	rs868853	94753077	0.09	0.06	0.094	1.56	109	96	0.36	1.14	0.11	1.22	0.96 to 1.56
13	rs4773905	94881647	0.29	0.27	0.48	1.12	274	286	0.61	0.96	0.93	0.99	0.86 to 1.15
13	rs3843691	95128732	0.43	0.45	0.57	0.92	326	317	0.72	1.03	0.96	1.00	0.88 to 1.15
13	rs1537030	95343290	0.45	0.46	0.87	0.98	279	308	0.23	0.91	0.28	0.93	0.81 to 1.06
13	rs1411889	96331433	0.40	0.43	0.42	0.89	299	302	0.90	0.99	0.61	0.96	0.84 to 1.11
13	rs8001181	97409107	0.45	0.43	0.69	1.06	321	321	1	1	0.85	1.01	0.89 to 1.16
13	rs12583114	97561905	0.32	0.30	0.58	1.09	280	272	0.73	1.03	0.56	1.04	0.90 to 1.21
13	rs9634510	97572905	0.25	0.24	0.67	1.07	237	237	1	1	0.84	1.02	0.87 to 1.19
13	rs285081	97574397	0.39	0.45	0.11	0.80	345	314	0.23	1.10	0.76	1.02	0.89 to 1.17
13	rs285083	97576174	0.097	0.060	0.042	1.70	111	121	0.51	0.92	0.74	1.04	0.83 to 1.31
13	rs206209	97580687	0.54	0.43	0.0023	1.53	300	358	0.024	0.84	0.64	0.96	0.85 to 1.11
13	rs172245	97582132	0.48	0.40	0.036	1.35	293	344	0.043	0.85	0.45	0.95	0.83 to 1.09
13	rs285030	97583690	0.51	0.41	0.0047	1.49	300	353	0.038	0.85	0.66	0.97	0.85 to 1.11
13	rs285031	97584032	0.19	0.18	0.90	1.02	172	222	0.012	0.77	0.029	0.82	0.69 to 0.98
13	rs285033	97587810	0.19	0.15	0.11	1.34	198	204	0.76	0.97	0.63	1.04	0.88 to 1.24
13	rs285034	97588194	0.068	0.051	0.28	1.37	63	81	0.13	0.78	0.45	0.90	0.67 to 1.19
13	rs10508035	97588800	0.103	0.092	0.59	1.14	130	133	0.85	0.98	0.92	1.01	0.82 to 1.25

F_A, minor allele frequency in KD cases; F_U, minor allele frequency in controls; SNP, single nucleotide polymorphism; T, number of times the minor allele was transmitted; U, number of times the minor allele was un-transmitted.