Patient no | Exon | Sample† | Non-deleted controls‡ | Deleted controls§ | ||||
Mean | Min | Max | Mean | Min | Max | Mean | ||
175 | 3 | 0.70 | 0.96 | 1.03 | 1.00 | 0.69 | 0.72 | 0.70 |
4a | 0.46 | 0.86 | 1.14 | 0.99 | 0.44 | 0.53 | 0.50 | |
113 | 3 | 0.55 | 0.96 | 1.03 | 1.00 | 0.69 | 0.72 | 0.70 |
4a | 0.26 | 0.86 | 1.14 | 0.99 | 0.44 | 0.53 | 0.50 | |
34 | 4a | 0.44 | 0.86 | 1.14 | 0.99 | 0.44 | 0.53 | 0.50 |
201 | 3 | 0.58 | 0.96 | 1.03 | 1.00 | 0.69 | 0.72 | 0.70 |
4a | 0.37 | 0.86 | 1.14 | 0.99 | 0.44 | 0.53 | 0.50 | |
61 | 10a | 0.68 | 0.81 | 0.95 | 0.89 | 0.64 | 0.68 | 0.67 |
15 | 0.32 | 0.85 | 1.00 | 0.95 | 0.44 | 0.56 | 0.49 | |
72 | 10a | 0.65 | 0.89 | 1.05 | 0.98 | 0.64 | 0.68 | 0.67 |
117 | 11 | 0.69 | 0.89 | 0.97 | 0.93 | 0.67 | 0.70 | 0.69 |
18 | 22 | 0.48 | 0.84 | 0.92 | 0.87 | 0.49 | 0.55 | 0.51 |
23.1 | 0.49 | 0.87 | 1.09 | 0.96 | 0.47 | 0.53 | 0.49 | |
131 | 26 | 0.43 | 0.87 | 1.20 | 1.01 | 0.44 | 0.53 | 0.47 |
27a | 0.57 | 0.83 | 0.94 | 0.89 | 0.47 | 0.57 | 0.51 | |
227 | 34 | 0.65 | 0.95 | 1.02 | 0.97 | 0.64 | 0.69 | 0.66 |
307 | OMG | 0.57 | 0.92 | 0.99 | 0.95 | 0.49 | 0.56 | 0.53 |
30 | 0.56 | 0.94 | 0.96 | 0.95 | 0.52 | 0.58 | 0.56 | |
16 | 35 | 0.60 | 0.88 | 0.96 | 0.92 | 0.59 | 0.65 | 0.61 |
190 | 35 | 0.33 | 0.88 | 0.96 | 0.92 | 0.59 | 0.65 | 0.61 |
36 | 0.55 | 0.74 | 1.20 | 0.90 | 0.54 | 0.59 | 0.56 | |
196 | 36 | 0.55 | 0.74 | 1.20 | 0.90 | 0.54 | 0.59 | 0.56 |
Min, minimum; Max, maximum.
*Results for unknown NF1 samples, non-deleted negative controls, and deleted positive controls are expressed in N-fold changes in NF1 gene copies, normalised to ZNF80 relative to the copy number of the NF1 gene in the calibrator, according to the following equation: amount of target = 2−ΔΔCt.34
The ΔΔCt calculation used for the relative quantification of target was as follows: ΔΔCt = (Ct, target NF1 exon – Ct, ZNF80)χ–(Ct, target NF1 exon–Ct, ZNF80)y, where χ = unknown NF1 sample (†), nondeleted negative control (‡) or deleted positive control (§), and y = calibrator.