MYCN, Meis1, or TrkA regulated gene expression in SH-EP, SJ-NB8, and SH-SY5Y neuroblastoma cell lines
Gene | Start position, bp | SAGE tag(s) | SH-EP | SJ-NB8 | SH-SY5Y | |||
---|---|---|---|---|---|---|---|---|
MYCN | Meis1 | TrkA | ||||||
Off | On | Off | On | Off | On | |||
The SAGE tag frequencies are normalised per 100 000 transcripts in the cell. Potentially relevant gene expression differences are depicted in bold. *Tag can also belong to two other, unrelated genes. | ||||||||
Ubb | 16 484 927 | GTAGCAAAAA | 23 | 12 | 15 | 12 | 17 | 13 |
GTAGCATAAA | 32 | 17 | 43 | 57 | 55 | 48 | ||
GCATTCGCAG | 0 | 0 | 12 | 1 | 2 | 0 | ||
Total | 55 | 29 | 70 | 70 | 74 | 61 | ||
Tom1l2 | 17 950 706 | TAAAATACTC | 9 | 0 | 0 | 0 | 2 | 0 |
TGGCACGCTG | 0 | 0 | 0 | 0 | 2 | 0 | ||
Total | 9 | 0 | 0 | 0 | 4 | 0 | ||
Prpsap2 | 18 962 058 | CTTGTTCCTC | 0 | 0 | 5 | 0 | 0 | 0 |
Mfap4 | 19 448 786 | AGGGAGCAGA | 2 | 15 | 12 | 5 | 0 | 21 |
Usp22 | 21 068 373 | GCCTTTCCCT | 0 | 9 | 6 | 1 | 4 | 4 |
TTTTATAAAA* | 2 | 3 | 5 | 0 | 7 | 0 | ||
Total | 2 | 12 | 11 | 1 | 11 | 4 |