Minor allele frequencies for the three variants as reported in different populations
Variant | Population sample set | Minor allele frequency | Hardy–Weinberg goodness of fit* | |||
---|---|---|---|---|---|---|
*The concordance of the observed allele frequencies in our sample set with the Hardy–Weinberg equilibrium are represented as a one sided p value of a χ2 test. Corresponding values for the other populations are reported where available. | ||||||
†The NCBI data are taken from the relevant home page (www.ncbi.nlm.nih.gov). | ||||||
‡The allele frequency in the Swedish population for APOε4 is listed as reported by Liljedahl et al.24 | ||||||
§The allele frequencies in the Scandinavian populations for the CCR5 32Bp ins/del variant are listed as reported by Libert et al.25 | ||||||
¶The allele frequency in a Scandinavian population for the PPARγ variant as reported by Altshuler et al.26 | ||||||
N/A, not assessed. | ||||||
APOε4 (rs429358) | Our samples | 0.154 | 0.035 | |||
NCBI† | 0.148 | N/A | ||||
Sweden‡ | 0.220 | N/A | ||||
CCR5 32Bp ins/del | Our samples | 0.106 | 0.388 | |||
Sweden§ | 0.142 | 0.281 | ||||
Finland§ | 0.158 | 0.062 | ||||
Norway§ | 0.105 | 0.24 | ||||
Denmark§ | 0.110 | 0.216 | ||||
PPARγ (rs1801282) | Our samples | 0.138 | 0.727 | |||
Scandinavian population¶ | 0.150 | N/A | ||||
NCBI | 0.056 | 0.439 |