Pairwise linkage disequilibrium measures, r2 (above diagonal) and D′ (below diagonal), in unaffected individuals
| SNP1 | SNP2 | SNP3 | SNP4 | SNP5 | SNP6 | SNP7 | SNP8 | SNP9 | SNP10 | SNP11 | |
|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP1 | 0.00 | 0.00 | 0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | |
| SNP2 | 0.10 | 0.07 | 0.00 | 0.00 | 0.01 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | |
| SNP3 | 0.05 | 0.55 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.01 | |
| SNP4 | 0.12 | 0.02 | 0.11 | 0.00 | 0.02 | 0.01 | 0.01 | 0.02 | 0.01 | 0.01 | |
| SNP5 | 0.01 | 0.10 | 0.02 | 0.06 | 0.05 | 0.10 | 0.17 | 0.06 | 0.01 | 0.00 | |
| SNP6 | 0.01 | 0.12 | 0.01 | 0.22 | 0.24 | 0.21 | 0.16 | 0.97 | 0.30 | 0.05 | |
| SNP7 | 0.09 | 0.20 | 0.03 | 0.10 | 0.67 | 0.98 | 0.77 | 0.20 | 0.17 | 0.02 | |
| SNP8 | 0.01 | 0.20 | 0.01 | 0.07 | 0.97 | 0.97 | 0.98 | 0.16 | 0.14 | 0.02 | |
| SNP9 | 0.00 | 0.09 | 0.04 | 0.19 | 0.25 | 0.99 | 0.97 | 0.98 | 0.29 | 0.05 | |
| SNP10 | 0.07 | 0.04 | 0.07 | 0.29 | 0.10 | 0.97 | 0.87 | 0.89 | 0.97 | 0.01 | |
| SNP11 | 0.02 | 0.15 | 0.11 | 0.17 | 0.03 | 0.24 | 0.25 | 0.29 | 0.26 | 0.13 |