Table 7

Tests for association of type 2 diabetes with SNP alleles (or haplotypes at compound loci)

Locus	Haplotype	Adjusted for age, sex only					Adjusted for age, sex, admixture
Locus	Haplotype	Score	Obs Info	% Info	OR	p	Score	Obs Info	% Info	OR	p
For haplotypes where the observed information is less than 1, p values are omitted.
Candidate genes
CAPN10	UCSNP 43-19-63-44
CAPN10	G-3-C-T	0.42	39.87	94	1.01	0.95	0.52	38.13	92	1.01	0.93
CAPN10	G-2-T-T	6.14	26.56	96	1.26	0.23	4.23	24.45	92	1.19	0.39
CAPN10	G-2-C-T	6.04	25.5	92	1.27	0.23	6.84	24.05	90	1.33	0.16
CAPN10	G-2-C-C	−6.80	21.26	97	0.73	0.14	−6.32	20.05	94	0.73	0.16
CAPN10	A-3-C-T	−5.03	36.9	96	0.87	0.41	−4.55	35.20	93	0.88	0.44
CAPN10	Others	−0.78	0.48				−0.71	0.46

PPARG	E6-Pro12Ala
PPARG	C-Ala	1.25	5.493	93	1.26	0.59	0.73	5.57	85	1.14	0.76
PPARG	C-Pro	−8.78	24.44	99	0.70	0.08	−7.74	23.26	93	0.72	0.11
PPARG	T-Ala	5.20	17.38	97	1.35	0.21	4.34	14.90	90	1.34	0.26
PPARG	T-Pro	2.32	2.576	90	2.46	0.15	2.67	2.50	73	2.91	0.09

ABCC8/KCNJ11	E31-E33-E23K
ABCC8/KCNJ11	A-T-G	13.96	44.06	96	1.37	0.03	11.28	39.25	90	1.33	0.07
ABCC8/KCNJ11	G-T-G	1.525	46.18	96	1.03	0.82	2.549	41.77	92	1.06	0.69
ABCC8/KCNJ11	G-G-A	−16.6	49.82	100	0.72	0.02	−14.87	45.83	95	0.72	0.02
ABCC8/KCNJ11	Others	1.116	0.4966				1.04	0.5004

ABCC8-ex16		−7.60	52.10	99.8	0.86	0.29	−4.95	47.66	95.4	0.90	0.47
GNB3		−6.60	41.46	100	0.85	0.31	−6.31	39.69	98	0.85	0.32