A-B SNPs in known Pas1 genes. SNPs appear in order of position on the chromosome. SNP ID is Celera’s unique ID number for the SNP. GenBank refers to the transcript sequence associated with the gene containing the SNP. Gene name is derived from Celera’s annotation wherever possible. Type refers to the gene structure containing the SNP and, for coding SNPs, it refers to the effect on amino acid sequence predicted by the most authoritative reading frame(s) for the transcript. Chr refers to the base pair position of the SNP on the chromosome according to the Celera CDS 3.6 assembly. mRNA refers to its nucleotide position within the corresponding Celera transcript. Allele/codon describes the nucleotide change, and, when it occurs within the translated region, it is described in terms of the codon triplet. C57BL/6J alleles always appear on the left, A/J alleles on the right. DBA refers to concordance of DBA/2J allele with B6 allele. RT is checked when the SNP was confirmed by RT-PCR sequencing. Array refers to whether the gene was found differentially regulated in a previous microarray study (Lemon WJ et al. J Med Genet 2002;39:644–55). Pb is checked when published reports have associated the gene with cancer. Description is derived from either Celera annotation or GenBank annoation, whichever the authors deemed more clear, with deference to Celera.
| Relative position | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| SNP ID | GenBank | Gene name | Type | Chr | mRNA | Codon | AA | DBA | SNP RT | Pb | Description |
| mCV22281390 | BM489316 | Arpc4 | Missense | 112,205,003 | 48 | GGC GTC | Gly Val | Actin related protein 2/3 complex, subunit 4 | |||
| mCV22584830 | NM_009525 | Wnt5b | 3′ UTR | 118,266,570 | 1158 | A/G | Y | Wingless related MMTV integration site 5B | |||
| mCV25250691 | NM_008646 | Mug2 | Nonsense | 120,923,657 | 4417 | TGA CGA | Stop Arg | Y | Murinoglobulin 2 | ||
| mCV25250751 | M65237 | Mug1 | 5′ UTR, missense | 120,988,713 | 788/808 | GTA GCA | Ala Val | Murinoglobulin (MUG3) | |||
| mCV24835024 | NM_009645 | Aicda | 3′ UTR | 121,357,737 | 1703 | G/A | Activation induced cytidine deaminase | ||||
| mCV24136983 | NM_027218 | 1810046I24Rik | Missense | 121,870,184 | 618 | AAA AAC | Asn Lys | Y | C type lectin | ||
| mCV22899606 | NM_010736 | Ltbr | 3′ UTR | 123,978,076 | 1445 | G/A | Lymphotoxin B receptor | ||||
| mCV25230505 | NM_007376 | A2m | Missense | 127,183,453 | 1670 | ATT GTT | Ile Val | Y | Alpha-2-macroglobulin | ||
| mCV22524446 | NM_031499 | Prp2 | Missense | 130,318,725 | 5252 | CAA GAA | Glu Gln | Y | Y | Proline rich protein 2 | |
| mCV24262005 | NM_008462 | Klra2 | 3′ UTR | 133,237,819 | 1237 | C/T | Y | Killer cell lectin-like receptor, subfamily A, member 2 | |||
| mCV23359715 | NM_026371 | 5830457J20Rik | 3′ UTR | 134,662,880 | 1095 | T/A | |||||
| mCV23359716 | 3′ UTR | 134,663,400 | 1615 | A/G | Y | ||||||
| mCV24045161 | NM_025589 | 2410038A03Rik | Missense | 136,486,200 | 201 | GAT GGT | Asp Gly | Y | |||
| mCV23381606 | NM_011216 | Ptpro | 3′ UTR | 137,526,924 | 1929 | -/T | Y | Y | Protein tyrosine phosphatase, receptor type, O | ||
| mCV24099286 | NM_024469 | Bhlhb3 | Missense | 145,935,561 | 812 | TCG CCG | Ser Pro | Y | Y | basic helix-loop-helix domain containing, class B3 | |