PCR reaction | Region amplified | Sense primer | Antisense primer | Amount of primer added to volume of 25 μl (pmol) | Product length |
---|---|---|---|---|---|
Each primer used in PCR 1 reaction begins with 22 bp P2 universal sequence. | |||||
A fluorescent label (6-Fam) is attached to the 5` end of the antisense P2 universal primer only. | |||||
(A) Oligonucleotides for UPQFM-PCR | |||||
PCR 1 | Exon 1 | E1Fn: | P2-UnivF-tacggccctgaagaagacg | 5 | 321 bp |
E1R: | P2-UnivR-tacctcggtagctgtggatg | 5 | |||
Exon 2 | E2Fn: | P2-UnivF-agacgaggtttcaccacgtt | 2 | 396 bp | |
E2R: | P2-UnivR-gggcttaatttttcaagtggtc | 2 | |||
Exon 3 | E3Fn: | P2-UnivF-tactgagaccctagtctgtcactg | 1,5 | 364 bp | |
E3R: | P2-UnivR-ctaaggaaggaaccagtcctgtat | 1,5 | |||
β-globin | BgFn: | P2-UnivF-cacaccctagggttggccaa | 2 | 304 bp | |
BgR: | P2-UnivR-acctgtcttgtaaccttgatac | 2 | |||
PCR 2 | All above fragments | P2 Univ F: | tcc gtc tta gct gag tgg cgt a | 4 | |
P2 Univ R: | 6-Fam-agg cag aat cga ctc acc gct a | 4 |
PCR reaction | Initial denaturation at 94°C | Each cycle of | No of cycles | Final elongation at 72°C | Template | ||
---|---|---|---|---|---|---|---|
Denaturation at 95°C | Annealing at 60°C | Elongation at 72°C | |||||
(B) Conditions for UPQFM-PCR | |||||||
PCR-1 | 10 minutes | 1 minute | 2 minutes | 1 minute | 9 cycles | 5 minutes | 100 ng genomic DNA |
PCR-2 | 4 minutes | 1 minute | 2 minutes | 1 minute | 20 cycles | 5 minutes | 2 μl PCR 1 product |