Table 2

Transmission disequilibrium tests in 196 trios

Gene	dbSNP ID	Allele/ haplotype	T	NT	χ²	p Value	Ratio (T/NT)	95% CI for ratio
T, transmitted; NT, not transmitted; CI, confidence interval.
INPP1	rs4656	G	56	34	5.38	0.020	1.65	1.09−2.60
	rs4656	T	34	56	5.38	0.020	0.61	0.38−0.92
	rs4940	A	45	70	5.43	0.019	0.64	0.43−0.92
	rs4940	G	70	45	5.43	0.019	1.56	1.08−2.31
PIK3CG	rs1129293	C	64	43	4.12	0.042	1.49	1.02−2.24
PIK3CG	rs1129293	T	43	64	4.12	0.042	0.67	0.45−0.98
TSC2	rs2073636	C	64	45	3.31	0.068	1.42	0.98−2.12
TSC2	rs2073636	T	45	64	3.31	0.068	0.70	0.47−1.02
TSC2	rs2074968	C	71	57	1.53	0.216	1.25	0.88−1.78
TSC2	rs2074968	G	57	71	1.53	0.216	0.80	0.56−1.13
INPP1 haplotypes Global χ² = 11.6, df = 2 p = 0.003		AG+GT	6	8	0.29	0.59	0.75	0.20−2.20
		AT	19	41	8.07	0.0045	0.46	0.25−0.77
		GG	44	20	9	0.0027	2.2	1.35−4.03
TSC2 haplotypes Global χ² = 4.73, df = 2 p = 0.09		CC	46	29	3.85	0.050	1.64	1.04−2.73
		CG+TC	9	13	0.72	0.40	0.69	0.26−1.59
		TG	27	40	2.52	0.112	0.68	0.40−1.09