Table 2

RLGS fragment sequence characteristics

		CpG island traits
RLGS fragment	Chr location	Size (bp)	%GC	CpG:GpC	Genomic context	Class of methylation
2B53	2q36–q37	1461	65	0.93	5′end/exon 1 of nucleolin gene	Both
2C59	19q13.2	1274	56	0.78	5′end/exon 1 of HSPC059 protein	Primary only
5E25	1q44	2033	70	0.73	5′end/exon 1 of formin-2 like gene	Both
3G46	11q23	1079	55	0.65	5′end/exon 1 of GlcNac-1-P transferase gene	Both
2C54	2q35	1860	68	0.86	5′end/exon 1 of cullin3 gene	Primary only
3E4	11q14	2322	67	0.83	5′end of α1,3 fucosyltransferace gene	Both
3F82	16p11.2	1422	67	0.86	CSDAP1 pseudogene 1	Both
2C29	6q21	885	55	0.75	EST accession No AL516185	Both
3E50	16p13.3	1479	66	0.75	EST accession No BE735354	Primary only
4B44	3q21	653	72	0.77	EST accession No AW294737	Both
4F22	3p25–p26	734	67	0.71	EST accession No AA338277	Both
2D27	4q33–q34	1030	69	0.84	EST accession No BF961384	Metastatic only
3C5	16q12.1	2153	73	0.88	EST accession No AV720746	Both
2D48	7p21	890	60	0.74	No known gene homology	Both
3E57	5	1025	60	0.69	No known gene homology	Both