Probe | Position | Exons hybridised | Fragment size (bp) | Sequence 5`→3` | PCR conditions MgCl2 - Annealing T |
---|---|---|---|---|---|
Positions of the primers are given relative to the start codon. The first primer of each set has a forward orientation, the second reverse. | |||||
P1 | −796, −777 | 1, 2 | 933 | GAGGAATCAACAGCCGCCAT | 2.5 mmol/l - 60°C |
+117, +137 | GGTATCAGCTCATCAGGAAGA | ||||
P2 | +33, +52 | 2-4 | 995 | CCCCAAAAGAGCCAAACTCA | 2 mmol/l - 55°C |
+1008, +1027 | CTGTTGCAATTGCTTGTGTG | ||||
P3 | +949, +968 | 4-9 | 985 | ACTTCAGTCACCAACGTGCC | 1.5 mmol/l - 60°C |
+1914, +1933 | CAGACTCGTACATGTCCCCT | ||||
P4 | +1847, +1866 | 9-15 | 1139 | CACCTGATCCCGCAGCTCTA | 2 mmol/l - 60°C |
+2967, +2985 | CACAGGTACGTCAGGTCCT | ||||
P5 | +2741, +2759 | 14-22 | 1197 | AGAGCACCCCTACAGTCCA | 2 mmol/l - 60°C |
+3916, +3937 | AGCAGTTGTCGCACACAAAACC | ||||
P6 | +3756, +3775 | 21-29 | 1212 | GGGTGACGACCCTTCACAGC | 2 mmol/l - 60°C |
+4948, +4967 | AGGGGGTCGGGGTCGACGAT | ||||
P7 | +4836, +4855 | 29-31 | 1058 | CAACGTGTCCAATGACCTGT | 1.5 mmol/l - 55°C |
+5873, +5893 | CTCGATCTGCCGAGCCGCTT | ||||
P8 | +5742, +5761 | 31 | 1283 | CGTGAGCATGTCACCAGCTG | 2.5 mmol/l - 60°C |
+7005, +7024 | TACTAAGGGACGTGGCGATC | ||||
P9 | +6903, +6922 | 31 | 1333 | GATGAAGCAGCAGATTGGGT | 1.5 mmol/l - 60°C |
+8214, +8235 | CCTTTTTGTCTGTTGCACACAG |