Single nucleotide polymorphic markers used
SNP | Primers | |
+9 of 3′ end of exon 1 | Fw GACCGGGGCGACTTCTATAC | |
c→g at 211+9 | Rev CACTCCGTGATCACAAGTTCAG | |
−9 of 5′ end of exon 10 | Fw AAACTAACATTCATAAGGGAGTTAAGG | |
t→a at 1511-9 | Rev CCAAACTGTGCACTGGAATC | |
+12 of 3′ end of exon 10 | Fw TGTAAGGAAGAAAAAGTCCTTCG | |
g→a at 1661+12 | Rev GAAAGCTTGACTCTTACCTGATGAC | |
+3 of 3′ end of exon 5 | Fw TGTAAAACGACGGCCAGTGTGGTATAGAAATCTTCGATTTTT | |
A→T at nt942+3 | Rev CAGGAAACAGCTATGACCAATCAACATTTTTAACCCTTTT | |
Exon 2 codon 113 | Fw TGTAAAACGACGGCCAGTGTCCAGCTAATACAGTGCTTG | |
AAG→AAA | Rev CAGGAAACAGCTATGACCCACATTTTTATTTTTCTACTCTTAA | |
Exon 2 codon 110 | Fw TGTAAAACGACGGCCAGTGTCCAGCTAATACAGTGCTTG | |
A→G at 329 | Rev CAGGAAACAGCTATGACCCACATTTTTATTTTTCTACTCTTAA | |
Exon 2 codon 96 | Fw TGTAAAACGACGGCCAGTGTCCAGCTAATACAGTGCTTG | |
G→A at 287 | Rev CAGGAAACAGCTATGACCCACATTTTTATTTTTCTACTCTTAA | |
Exon 3 codon 133 | FwTGTAAAACGACGGCCAGTAAAGTATGTTCAAGAGTTTGTTAAATTTTT | |
C→T at 399 | Rev CAGGAAACAGCTATGACCCTTTCCTAGGCCTGGAATCTC | |
Exon 3 codon 153 | FwTGTAAAACGACGGCCAGTAAAGTATGTTCAAGAGTTTGTTAAATTTTT | |
C→T at 459 | Rev CAGGAAACAGCTATGACCCTTTCCTAGGCCTGGAATCTC | |
Exon 6 codon 322 | Fw TGTAAAACGACGGCCAGTTTTTCACTAATGAGCTTGCCATTCTT | |
G→A at 965 | Rev CAGGAAACAGCTATGACCGGTAACTGCAGGTTACATAAAACTAACGA | |
Exon 6 codon 328 | Fw TGTAAAACGACGGCCAGTTTTTCACTAATGAGCTTGCCATTCTT | |
GCC→GCT | Rev CAGGAAACAGCTATGACCGGTAACTGCAGGTTACATAAAACTAACGA | |
−10 of 5′ end of exon 7 | Fw TGTAAAACGACGGCCAGTCGACTTAGTTGAGACTTACGTGC | |
t→c at 1077-10 | Rev CAGGAAACAGCTATGACCTTTATGAGGACAGCACATTGC | |
+49 of 3′ end of exon 7 | Fw TGTAAAACGACGGCCAGTCGACTTAGTTGAGACTTACGTGC | |
c→a at 1276+49 | Rev CAGGAAACAGCTATGACCTTTATGAGGACAGCACATTGC | |
Exon 11 codon 556 | Fw TGTAAAACGACGGCCAGTCATTGCTTCTAGTACACATTT | |
T→C at 1666 | Rev CAGGAAACAGCTATGACCCAGGTGACATTCAGAACATTA | |
Exon 11 codon 579 | Fw TGTAAAACGACGGCCAGTCATTGCTTCTAGTACACATTT | |
A→G at 1737 | Rev CAGGAAACAGCTATGACCCAGGTGACATTCAGAACATTA | |
Exon 11 codon 585 | Fw TGTAAAACGACGGCCAGTCATTGCTTCTAGTACACATTT | |
TCT→TCC | Rev CAGGAAACAGCTATGACCCAGGTGACATTCAGAACATTA | |
Exon 12 codon 596 | Fw TGTAAAACGACGGCCAGTTCAGTATTCCTGTGTACATTT | |
A→G at 1787 | Rev CAGGAAACAGCTATGACCTTACCCCCACAAAGCCCAA | |
−6 of 5′ end of exon 13 | Fw TGTAAAACGACGGCCAGTGTAGCAGAAAGAAGTTTAAAACTTGC | |
t→c at 2006-6 | Rev CAGGAAACAGCTATGACCGGACAGAGACATACATTTCTATCTTC | |
Exon 13 codon 713 | Fw TGTAAAACGACGGCCAGTGTAGCAGAAAGAAGTTTAAAACTTGC | |
G→C at 2139 | Rev CAGGAAACAGCTATGACCGGACAGAGACATACATTTCTATCTTC | |
Exon 13 codon 718 | Fw TGTAAAACGACGGCCAGTGTAGCAGAAAGAAGTTTAAAACTTGC | |
A→G at 2154 | Rev CAGGAAACAGCTATGACCGGACAGAGACATACATTTCTATCTTC | |
Microsatellites | Primers | |
TTTA repeat | Fw FAM-GAGGATGGCCACAAATTAGC2-150 | |
Rev ACCAGGGAGTCAGAGTTTGC | ||
TTTG repeat | Fw NED-TGGTGTAGGCAGCCATGTATC2-150 | |
Rev CCTCTGCCTAGGAAAACCAG | ||
TAAA repeat | Fw HEX-TGAGTATTGCTCTCTTGCTATCTTG2-150 | |
Rev AGAGCCGTAATCACTCAATGTG | ||
CA repeat 1 | Fw FAM-TCACCCCAGCCAGACTCTAAG2-150 | |
Rev GTTTCTTCAGATTTTTATTGAGAACCTACCAGG | ||
CA repeat 2 | Fw FAM-TGTTGGACTCCGCAGGATTG2-150 | |
Rev GTTTCTTTAGGTGTATGTAGTAGAGGGCAAGC | ||
CA repeat 3 | Fw HEX-GTCTCTCTCTGTGTGTCTTTCTGCC2-150 | |
Rev GTTTCTTGCCAACTGGTTCCATTTGACC |
↵2-150 FAM, NED, and HEX are fluorescent labels tagged onto the 5′ end of the custom primers.