I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of
hypoparathyroidism, sensorineural deafness and renal dysplasia has been
recognized as a distinct clinical entity since the report by Bilous et al.
in 1992. In fact, this syndrome was described for the first time in 1977
by Barakat et al. [2]. The syndrome with presumed autosomal rec...
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of
hypoparathyroidism, sensorineural deafness and renal dysplasia has been
recognized as a distinct clinical entity since the report by Bilous et al.
in 1992. In fact, this syndrome was described for the first time in 1977
by Barakat et al. [2]. The syndrome with presumed autosomal recessive
inheritance was later named the “Barakat syndrome” [3-5]. In 1992 Bilous
et al. [6] described a phenotypically similar syndrome in one family with
autosomal dominant inheritance. The mode of inheritance may not be a
fundamental difference, and the disorder in the two families described by
Barakat and Bilous may be due to different mutations in the same
gene [7]. Inheritance in the family described by Barakat et al. could also be
autosomal dominant with reduced penetrance [7]. In 1997 Hasegawa et al. [8]
described a Japanese girl with this syndrome and a de novo deletion of
10p13. They suggested the name “HDR syndrome”. Subsequently, a few more
patients were reported.
Other synonyms for Barakat syndrome include
“Hypoparathyroidism, sensorineural deafness and renal dysplasia”, “HDR
syndrome”, and “Nephrosis, nerve deafness and hypoparathyroidism” [7]. The
syndrome should then consist of hypoparathyroidism, sensorineural deafness
and renal disease, since various renal abnormalities have been described
including nephrotic syndrome, renal dysplasia, hypoplasia and unilateral
renal agenesis, vesicoureteral reflux, pelvicalyceal deformity,
hydronephrosis, and chronic renal failure.
First described by Barakat et al. in 1977, Barakat syndrome is a rare
condition consisting of hypoparathyroidism, sensorineural deafness and
renal disease. The defect is on chromosome 10p15,10p15.1-p14, with
haploinsufficiency or mutation of the GATA3 gene being the underlying cause of the syndrome [7,9].
References
1. Muroya, K, Hasegawa,T, Ito,Y, Nagai,T. Isotani,H, Iwata,Y,
Yamamoto,K, Fujimoto,S, Seishu,S, Fukushima,Y, Hasegawa,Y, Ogata,T. GATA3
abnormalities and the phenotypic spectrum of HDR syndrome. J Med Genet
2001;38:374-80.
2. Barakat, AY, D'Albora, JB, Martin, MM, Jose, PA. Familial
nephrosis, nerve deafness, and hypoparathyroidism. J. Pediat 1977; 91: 61-
4.
3. McKusick V. Mendalian Inheritance in Man, 12th Edition, Volume 2,
Baltimore,The Johns Hopkins University Press, l998.
4. Magnalini SI, et al: Dictionary of Medical Syndromes, 4th
edition,Philadelphia, J.B. Lippencott-Raven, 1997, p 73.
5. Rimoin DL, Connor, JM, Pyeritz RE, Korf BR. Emery and Rimoin’s
Principles and Practice of Medical Genetics. Fourth Edition, Volume 2,
London, Churchill Livingstone, 2002, p2217.
6. Bilous, RW, Murty, G, Parkinson, DB, Thakker, RV, Coulthard, MG,
Burn, J, Mathias, D, Kendall-Taylor, P. Btief report: Autosomal dominant
familial hypoparathyroidism, sensorineural deafness, and renal dysplasia.
New Eng J Med 1992; 327: 1069-74.
7. Online Mendelian Inheritance in Man, Johns Hopkins University
#146255.
8. Hasegawa,T, Hasegawa, Y, Aso, T.; Koto, S, Nagai, T, Tsuchiya, Y,
Kim, K, Ohashi, H, Wakui, K, Fukushima, Y. HDR syndrome
(hypoparathyroidism, sensorineural deafness, renal dysplasia) associated
with del(10)(p13). Am J Med Genet 1997; 73: 416-8.
9. Van Esch, H, Groenen, P, Nesbit, MA, Schuffenhauer, S, Lichtner,
P, Vanderlinden, G, Harding, B, Beetz, R, Bilous, RW, Holdaway, I, Shaw,
NJ, Fryns, J.-P, Van de Ven, W, Thakker, RV, Devriendt, K. GATA3 haplo-
insufficiency causes human HDR syndrome. Nature 2000; 406: 419-22.
We would like to thank Dr. Brooks and his colleagues for their interest in
our article and their valuable remarks. As for the specific issues raised:
We feel that this as a good time to redefine the use of terms
associated with 'coloboma'. We would however suggest that this single word
be used to encompass all entities rather than 'uveal coloboma' for two
reasons. Firstly, 'uveal coloboma' is...
We would like to thank Dr. Brooks and his colleagues for their interest in
our article and their valuable remarks. As for the specific issues raised:
We feel that this as a good time to redefine the use of terms
associated with 'coloboma'. We would however suggest that this single word
be used to encompass all entities rather than 'uveal coloboma' for two
reasons. Firstly, 'uveal coloboma' is too specific and disregards the fact
that non-uveal tissue is often the most important tissue affected -
especially the retina. Secondly, it implies that the uvea has a central
role in aetiology which has yet to be determined. As alluded to in Dr.
Brooks' letter, we agree that more specific terms such as 'bilateral uveal
and retinal coloboma' could then be used to describe specific patients. As
to isolated optic nerve coloboma, whether the entity actually exists or
not or is due to other aetiological processes, awaits to be determined and
so we think the term should continue to be used.
We agree with Dr. Brooks' description of the mechanisms that may be
involved in closure of the optic fissure. We would however point out that
the genes involved do not always act in a positive way to 'mediate
closure' or 'set the stage'. For example, there are ocular coloboma genes
which are negative regulators of transcription, e.g. ZFHX1B (also known as
SIP1) which implies that some genes need to be switched off for closure to
occur [1,2].
Molecular diagnostics will be an important advance in this field.
Whilst it is true that, for ocular coloboma, we are not in a good position
yet to offer a cost-effective service, this may not be too far away. With
mounting experience of single nucleotide polymorphism (SNP) chips in
research laboratories for example (costing in the region of £300/$450 per
DNA sample), it is likely that these will reach clinical diagnostic
laboratory in the near future. As well as mutation screens in specific
coloboma genes, we foresee that 'gene-chips' specific for transcription
factor SNPs could be used to improve the effectiveness of screening. We
look forward to this development.
References
1. Gregory-Evans CY, Vieira H, Dalton R, et al. Ocular coloboma and
high myopia with Hirschsprung disease associated with a novel ZFHX1B
missense mutation and trisomy 21. Am J Med Genet 2004;131A:86-90.
2. Verschueren K, Remacle JE, Collart C, et al. SIP1, a novel zinc
finger/homeodomain repressor, interacts with Smad proteins and binds to
5′-CACCT sequences in candidate target genes. J Biol Chem
274:20489–20498.
Mattocks et al [1] have used direct DNA sequencing and comparative
sequence analysis to study NF1 patients and claim this study “achieved the
highest recorded mutation detection rate using a single technique for this
gene”. As a key point, the paper states that they studied 91 subjects
fulfilling the NIH NF1 diagnostic criteria and achieved a mutation
detection rate of 89% using automated comparative...
Mattocks et al [1] have used direct DNA sequencing and comparative
sequence analysis to study NF1 patients and claim this study “achieved the
highest recorded mutation detection rate using a single technique for this
gene”. As a key point, the paper states that they studied 91 subjects
fulfilling the NIH NF1 diagnostic criteria and achieved a mutation
detection rate of 89% using automated comparative sequence analysis. They
continue by saying “This detection rate is the highest for a single
technique and is therefore appropriate for routine clinical practice”.
When developing genetic tests, especially for large and complex genes
such as NF1, a large cohort of patients needs to be studied in a
comprehensive way in order to fully understand the spectrum of mutations
present in that gene. From our experience, it is of utmost importance to
analyze the complete gene for the presence of all possible alterations
that may result in a premature stop codon at the mRNA level [2]. A
significant fraction of the mutations in the NF1 gene cause aberrant
splicing and many of them are due to alterations outside the canonically
conserved AG/GT acceptor and donor sequences and even reside deep into the
large introns [2-4]. Also, a number of exonic mutations mimicking
nonsense, missense and even silent mutations at the genomic level have
been described that are splicing mutations and exert their effect by
creating a novel splice donor or acceptor or affect the function of an
exonic splicing enhancer (ESE) or exonic splicing silencer (ESS) [2, 5] .
Although we have now studied over 600 patients fulfilling the NIH criteria
using multiple complementary techniques, we are still challenged and
surprised by the diversity of mutations leading to this disorder.
There have been, unfortunately, some examples in literature where an
alteration is claimed to be a pathogenic mutation, and where later on this
statement needs to be revoked as the alteration is proven to be an
innocent polymorphism [6]. For thousands of hereditary disorders for which
the genes have been cloned, patients await the availability of a reliable
and sensitive diagnostic test and clinical molecular genetic labs
worldwide rely on published reports to help distinguish a polymorphism or
rare benign variant from a deleterious mutation.
This distinction is of utmost importance and has major ethical
implications with respect to the genetic counseling of patients seeking
diagnostic, pre-/oligosymptomatic and prenatal testing.
There is a need for a reliable and sensitive genetic test for the NF1
gene, to help resolve diagnostic dilemmas in patients not fulfilling the
NIH diagnostic criteria, especially young children but also atypical
patients, to determine the affection status of family members of an
affected person and to perform prenatal or pre-implantation diagnosis, if
desired. NF1 is a progressive disorder and many features increase in
frequency with age. CAL-spots are often the first signs of NF1 and may
already be present at birth, increasing in number during the first years
of life. Only about half of patients with sporadic NF1 fulfill the NIH
diagnostic criteria by one year of age and still 5% will not fulfill these
criteria by age 8 years [7]. Waiting for more symptoms to appear with time
in order to ascertain the diagnosis on a clinical basis can be very
stressful for families. Earlier diagnosis of NF1 allows to offer genetic
counseling to parents and relatives earlier as well as to initiate
interventions for learning or developmental problems sooner. Earlier
diagnosis will become even more important once more therapeutic options
become available. A direct genetic test may help to establish the
diagnosis earlier, especially in sporadic patients, but only when the
testing has a high sensitivity, i.e. finds the mutation in (almost) all
patients that eventually will fulfill the NIH criteria (low false negative
results) and, equally important, does not confuse a benign variant with a
pathogenic mutation (no false positive results).
We have identified multiple sequence changes in the paper by Mattocks
et al that are misclassified and hence need rectification to avoid
potential misdiagnoses based on the latter information.
Whereas the title of the paper states that automated comparative sequence
analysis identifies mutations in 89% of NF1 patients, Table 2 describes
these sequence alterations as “potentially significant” sequence
alterations. There also is a Table 3 summarizing polymorphisms found in
the study, which adds to the confusion and further suggests that
alterations in Table 2 are pathogenic mutations, as also the title
alludes. We think we need to make a clear distinction between a
deleterious mutation, an unclassified variant, a rare benign variant and a
polymorphism.
Table 2 contains four silent nucleotide changes: Q282Q, C680C, K1724K
and R1808R. The authors predict that these changes lead to a truncated
peptide, but no experimental evidence is given to proof this. Two of these
sequence changes have been observed by us and others and are definite rare
benign variants. c.5172G>A (K1724K) was first described by Peters et al
[8] as a polymorphism with allele frequencies of 0.99 for c.5172G and 0.01
for c.5172A. Peters et al [8] report on a patient who carries this
polymorphism in exon 28 as well as a frameshift mutation in exon 28. Also,
Fahsold et al [9] describe a patient with the c.5172G>A sequence change
as well as a pathogenic frameshift mutation in exon 37: c.6789del4. One of
us (LM) has observed this sequence change in 2/570 NF1 patients in which a
clearly pathogenic mutation, i.e. c.3216delC and c.1756_1759delACTA was
found as well. Thus, this sequence variant represents an infrequent benign
variant that should not be confused with a bona fide pathogenic mutation.
Mattocks et al demonstrated that the silent nucleotide alteration K1724K
was also found in the affected mother and, thus, segregated with the
disease. However, this example clearly shows that this is not sufficient
to render final evidence of whether a variation is pathogenic. An effect
on splicing should be evidenced before a silent change should be
classified pathogenic.
A second silent sequence change Q282Q (c.846G>A) predicted by Mattocks
et al to result in a truncated protein has been described by Luca et al
[10] to be a polymorphism with a frequency of 2 %. One of us (LM) also
found Q282Q in 2/190 control samples and hence this alteration also has to
be considered as a rare benign variant. By protein truncation testing and
direct cDNA sequencing as described previously [2], we did not observe
production of a truncated peptide nor any effect on splicing due to Q282Q.
In the light of these obvious misclassifications, the prediction of the
truncating effect of the two other silent sequence changes (c.2040C>T
C680C; c.5427G>A R1808R) needs to be considered with great caution,
especially as these changes fulfill none of the classic criteria for
pathogenic mutations: both silent changes have not been reported
previously, they have not been demonstrated to occur de novo in sporadic
patients neither were they shown to segregate with the disease in a given
family and most importantly they were not proven to affect splicing.
Hence, these changes can not be considered pathogenic unless data are
provided rendering evidence that these changes have an effect on the
correct splicing of the NF1 gene. Through the study of over 600 unrelated
NF1 patients fulfilling NIH criteria, we identified 29 patients carrying a
pathogenic truncating mutation as well as a silent mutation, the latter
without observed effect on splicing (Messiaen et al, unpublished results).
Apart from the silent sequence changes, also the classification of
NF1 missense mutations is particularly challenging. Table 2 contains at
least one missense alteration (D176E) that was reported previously to be a
polymorphism [9]. One of us (LM) also identified D176E in 1 NF1 patient
carrying another clearly pathogenic alteration and in 1/190 normal control
samples, confirming D176E is indeed a rare benign variant. We do not
understand why the authors list a patient carrying this sequence change in
Table 2, since in their Table 3 they state that this alteration is a
polymorphism also found in unaffected individuals. Similarly, they list a
patient carrying the missense alteration c.2617C>T (R873C) in Table 2,
while at the same time state in Table 3 that this also is a benign variant
they found in a patient who carried a clearly pathogenic mutation c.1-
14_7del21bp.
Nevertheless, the authors mention both alterations in Table 2 and these
data as well as the formerly mentioned misclassified alterations are taken
into account to come to the conclusion that the technique has a 89%
detection rate.
Y489C (c.1466A>G) is one of the most frequent recurrent mutations in
NF1 patients and was the first well-understood splice mutation that could
be misclassified as a missense mutation if only genomic DNA would be
studied [11]. This mutation results in the creation of a perfect novel
splice donor that is used by the splicing machinery instead of the wild-
type exon 10b donor, and leads to skipping of the last 62 nucleotides of
exon 10b. Y489C has since been reported in many NF1 mutation papers [9, 12
-14]. Hence we do not understand why Mattocks et al describe this
mutation, which they found in 3 NF1 patients, as a missense mutation that
was not previously reported.
G629R (c.1885G>A) can not be considered to be purely a missense
mutation either: Ars et al reported a splice effect in 5 patients [3]. We
observed this splice effect in 3 unrelated patients as well (Messiaen et
al, unpublished results): the observed splicing error is readily
understood by the creation of a novel splice acceptor site by this
mutation, leading to skipping of the first 41 bp of exon 12b.
Recalculating the number of putative missense mutations after
subtraction of the above mentioned misclassifications, Table 2 of the
Mattocks et al. paper still contains a total of 12 different missense
mutations or small deletions of 1 or 2 amino acids that affect 15 patients
fulfilling the NIH diagnostic criteria, i.e H31R, L145P, E337V, C324R,
L532P, S574R, L844P, R1276G, R1276Q, ÄE1438, ÄIY1658-9 and ÄNF2366-7.
Hence, as many as 16.5% (15/91) of the patients fulfilling the NIH
diagnostic criteria, harbor putative missense mutations and small
deletions of one or more amino acids. This number appears quite high in
comparison to other previous reports with high mutation detection rates
(Messiaen et al. 2000, Ars 2000). Thus, it may very well be that a portion
of the novel missense mutations found in the study of Mattocks at al are
splicing mutations. The authors are aware of this possibility and have
developed tools such as a functional splicing assay using a minigene
system to test for the effect on splicing. We do not understand why they
did not apply these tools in this study to achieve a conclusion on the
effect of silent and missense mutations. Furthermore, some of the novel
missense mutations -similarly as D176E, R873C, A2058D - may turn out to be
non pathogenic rare sequence variants. Their finding of different missense
mutations (R873C and A2058D) in 2 NF1 patients carrying another clearly
pathogenic mutation further underscores this possibility.
In the absence of functional assays, rigorous criteria must be
applied before a novel missense alteration in the NF1 gene can be
classified as the disease causing mutation in order to avoid diagnostic
errors.
The following criteria are proposed and applied when clinical testing is
offered: i/ absence of any other possible deleterious mutation after
analysis of the whole coding region. Analysis must include screening for a
total gene deletion, smaller deletions (one to multiple exons deletions),
splice mutations including deep intronic mutations affecting splicing.
This is not achieved when only genomic DNA is studied as described in the
paper by Mattocks et al. If RNA-based mutation analysis reveals an effect
on splicing, the “missense” mutation can be considered to be deleterious;
ii/ absence of the sequence alteration in a large number of unrelated
control samples. This is a necessary but insufficient criterion. Indeed,
we still find novel benign variants on the wild-type NF1 gene, inherited
from the unaffected parent, even after analyzing >600 patients; iii/
support from evolutionary conservation in Mus musculus, Rattus norvegicus,
Takifugu rubripes and Drosophila melanogaster of the amino acid under
consideration as well as support from algorithms such as the ones
developed by Miller and Kumar [15]; iv/ finally and importantly, clinical
and molecular genetic assessment of the family. In case the patient is a
sporadic case, the missense mutation needs to be proven to be a de novo
event and clinical evaluation of both parents needs to show absence of the
disorder in them. In case the patient has a positive family history, the
missense mutation needs to be proven to segregate with the disorder in the
family by analysis of one affected relative.
Taken together, the two main findings summarized in the title of the
paper by Mattocks et al do not withstand a critical review of the data
provided. We believe it is not justified to draw conclusions on detection
rates of the assay presented here unless the pathogenity of the novel
silent and missense alterations contained in Table 2 has been evidenced by
some means. After pointing out a number of obvious misclassifications in
the list it is fair to state that the detection rate is certainly lower
than calculated by the authors.
Furthermore, due to these misclassifications and the lack of evidence that
a fraction of the remaining missense alterations do not affect splicing
it is not justified to use these data to confirm or refute a mutation
cluster in the exons 11-17 pointing to the existence of a novel functional
domain..
We disagree that this single technique as applied here is appropriate
for clinical practice and strongly advocate comprehensive analysis of the
complete coding region before a missense or silent alteration is
considered to be a pathogenic alteration. In the absence of any other
possible pathogenic alteration, missense mutations must be evaluated
according to the criteria discussed above. Silent mutations can not be
considered to be pathogenic unless proof is provided that they are
altering function, e.g. correct splicing. We are hopeful and optimistic
that mutation detection in the NF1 gene will become more easily
accomplished, faster and cheaper once more reliable data become available
and technologies further develop. Then, direct cycle sequencing or
resequencing arrays will allow detecting in a fast and efficient manner a
fair number of pathogenic lesions. However, genomic DNA sequencing assays
alone will not allow deciding on the pathogenicity of missense or silent
alterations, not yet described before. This reply is meant to stimulate
vigilance in the community to avoid potential diagnostic errors.
Ludwine Messiaen (1) and Katharina Wimmer (2)
(1) Dept of Genetics, University of Alabama at Birmingham, US.
(2) Dept of Human Genetics at the Clinical Institute for Medical and
Chemical Laboratory Diagnostics, Medical University Vienna, Austria.
References
(1) Mattocks C, Tarpey P, Bobrow M, Whittaker J. Comparative
sequence analysis (CSA): A new sequence-based method for the
identification and characterization of mutations in DNA. Hum Mutat 2000
Nov;16(5):437-43.
(2) Messiaen LM, Callens T, Mortier G, Beysen D, Vandenbroucke I,
Van Roy N, Speleman F, Paepe AD. Exhaustive mutation analysis of the NF1
gene allows identification of 95% of mutations and reveals a high
frequency of unusual splicing defects. Hum Mutat 2000;15(6):541-55.
(3) Ars E, Serra E, Garcia J, Kruyer H, Gaona A, Lazaro C, Estivill
X. Mutations affecting mRNA splicing are the most common molecular defects
in patients with neurofibromatosis type 1. Hum Mol Genet 2000 Jan
22;9(2):237-47.
(4) Perrin G, Morris MA, Antonarakis SE, Boltshauser E, Hutter P.
Two novel mutations affecting mRNA splicing of the neurofibromatosis type
1 (NF1) gene. Human Mutation 1996;7(2):172-5.
(5) Zatkova A, Messiaen L, Vandenbroucke I, Wieser R, Fonatsch C,
Krainer AR, Wimmer K. Disruption of exonic splicing enhancer elements is
the principal cause of exon skipping associated with seven nonsense or
missense alleles of NF1. Hum Mutat 2004 Nov 2;24(6):491-501.
(6) Lambert J, Naeyaert JM, De Paepe A, Van Coster R, Ferster A,
Song M, Messiaen L. Arg-Cys Substitution at Codon 1246 of the Human Myosin
Va Gene is not Associated with Griscelli Syndrome. J Invest Dermatol 2000
Apr 1;114(4):731-3.
(7) DeBella K, Szudek J, Friedman JM. Use of the national institutes
of health criteria for diagnosis of neurofibromatosis 1 in children.
Pediatrics 2000 Mar;105(3 Pt 1):608-14.
(8) Peters H, Luder A, Harder A, Schuelke M, Tinschert S. Mutation
screening of neurofibromatosis type 1 (NF1) exons 28 and 29 with single
strand conformation polymorphism (SSCP): five novel mutations, one
recurrent transition and two polymorphisms in a panel of 118 unrelated NF1
patients. Mutations in brief no. 229. Online. Hum Mutat 1999;13(3):258.
(9) Fahsold R, Hoffmeyer S, Mischung C, Gille C, Ehlers C,
Kucukceylan N, Abdel-Nour M, Gewies A, Peters H, Kaufmann D, Buske A,
Tinschert S, Nurnberg P. Minor lesion mutational spectrum of the entire
NF1 gene does not explain its high mutability but points to a functional
domain upstream of the GAP-related domain. Am J Hum Genet 2000
Mar;66(3):790-818.
(10) De Luca A, Buccino A, Gianni D, Mangino M, Giustini S, Richetta
A, Divona L, Calvieri S, Mingarelli R, Dallapiccola B. NF1 gene analysis
based on DHPLC. Hum Mutat 2003 Feb;21(2):171-2.
(11) Messiaen L, Callens T, Roux K, Mortier G, de Paepe A,
Abramowicz M, Pericak-Vance M, Vance J, Wallace MR. Exon 10b of the NF1
gene represents a mutational hotspot and harbors a recurrent missense
mutation Y489C associated with aberrant splicing. Genet Med. 1(6), 248-
253. 2004.
Ref Type: Generic
(12) Ars E, Kruyer H, Morell M, Pros E, Serra E, Ravella A, Estivill
X, Lazaro C. Recurrent mutations in the NF1 gene are common among
neurofibromatosis type 1 patients. J Med Genet 2003 Jun;40(6):e82.
(13) Han SS, Cooper DN, Upadhyaya MN. Evaluation of denaturing high
performance liquid chromatography (DHPLC) for the mutational analysis of
the neurofibromatosis type 1 ( NF1) gene. Hum Genet 2001 Nov;109(5):487-
97.
(14) Osborn MJ, Upadhyaya M. Evaluation of the protein truncation
test and mutation detection in the NF1 gene: mutational analysis of 15
known and 40 unknown mutations. Hum Genet 1999 Oct;105(4):327-32.
(15) Miller MP, Kumar S. Understanding human disease mutations
through the use of interspecific genetic variation. Human Molecular
Genetics 2001 Oct 1;10(21):2319-28.
We very much enjoyed reading the review article by Gregory-Evans et
al. on coloboma in the December issue of the Journal of Medical Genetics.
The authors should be commended on the most thorough treatment of the
subject in the clinical genetics literature to date. In reading it,
however, we thought there were a few additional points that required
clarification.
We very much enjoyed reading the review article by Gregory-Evans et
al. on coloboma in the December issue of the Journal of Medical Genetics.
The authors should be commended on the most thorough treatment of the
subject in the clinical genetics literature to date. In reading it,
however, we thought there were a few additional points that required
clarification.
The first is the use of the word “coloboma.” As the authors point
out, this term has been used somewhat imprecisely in the past. We would
propose the term “uveal coloboma” be used for those ocular malformations
that appear to be due to faulty optic fissure closure—including what is
listed as iris coloboma, chorioretinal coloboma, and some of the disorders
listed as “optic nerve colobomas.” The lattermost term is particularly
troublesome to use as it alternatively may mean a uveal coloboma that
extends posteriorly to the optic nerve or some other form of anomalous
nerve (e.g., the anomalous nerve in papillo-renal syndrome (PAX2
mutations) or the morning glory disc anomaly.[1]) They correctly point
out that these latter anomalies may have a different genetic and
embryologic basis. To avoid confusion, it might be appropriate to speak
of these conditions as “uveal coloboma with optic nerve involvement” and
“congenital optic nerve anomlies.”
Our second comment concerns the mechanism of uveal coloboma
formation. The authors do an excellent job at discussing the genes
involved in ocular development that may cause uveal coloboma. However, it
should be born in mind that non-closure of the optic fissure is the
“default state” of the developing optic cup and that failure to close
could result from either direct or indirect causes. The former are those
specific genes that mediate closure of the fissure; the latter are those
genes necessary to “set the stage” for fissure closure. An example of
such a gene is MITF, which, when mutated in mouse can produce an optic cup
with retarded growth such that the two edges of the optic fissure are not
in the right place at the right time to join.[2] An even more indirect
mechanism might result from toxicity from environmental agents.
Lastly, we want to underline the point made at the end of the paper
that we do not have good candidate genes to test on a wholesale basis for
a patient that presents with coloboma. We believe that it is premature to
offer testing for PAX6, CHX10 or SHH, for instance, on all patients, as
the yield would likely be very low and results might be difficult to
interpret.
Congratulations again on an overall superb article.
References
1. Sanyanusin P, Schimmenti LA, McNoe LA, et al. Mutation of the PAX2
gene in a family with optic nerve colobomas, renal anomalies and
vesicoureteral reflux. Nat Genet 1995;9:358-64.
2. Hero I, Farjah M, Scholtz CL. The prenatal development of the
optic fissure in colobomatous microphthalmia. Invest Ophthalmol Vis Sci
1991;32:2622-35.
We thank the authors for their comments on our Letter to the Editor
describing a novel locus for autosomal dominant keratoconus on chromosome 3 [1].
We thoroughly agree with the author’s opinion that simple astigmatism should not
be considered a diagnostic criteria for forme fruste KC. However, none of our 4
patients diagnosed with forme fruste KC had simple astigmatism. In these
patients, t...
We thank the authors for their comments on our Letter to the Editor
describing a novel locus for autosomal dominant keratoconus on chromosome 3 [1].
We thoroughly agree with the author’s opinion that simple astigmatism should not
be considered a diagnostic criteria for forme fruste KC. However, none of our 4
patients diagnosed with forme fruste KC had simple astigmatism. In these
patients, the clinical diagnosis of KC was based on a 1,5 Dioptre (D) increment
scale videokeratographic analysis. In particular, in patient III:9 (whose
videokeratographic picture is shown in the middle panel of figure 2) astigmatism
was irregular on the right eye and regular on the left. A superior-inferior
difference was recorded in both eyes, while in the right the corneal apex was
dislocated in the inferior temporal quadrant of the cornea. Thus, this patient
fulfil the diagnostic criteria for forme fruste KC [2]. Figure 2 showed these
findings, although some details could have been lost in the printed version. We
confirmed these data in patient III:9 with a more sensitive quantitative
evaluation of the same videokeratography using a colorcoded map with 0,45 D
increments. This analysis showed that the highest keratometric values in dioptre
were 42,70 D on the superior and 43,60 D on the inferior cornea of the right eye
and 43,60 D in the superior and 45,0 D on the inferior cornea of the left eye.
Taken together these data point out the role of videokeratography in the
diagnosis of subtle corneal abnormalities such as forme fruste KC, in agreement
with Levy and coworkers who recommend to achieve a detection rate of at least
0.5 D increment scale for forme fruste KC [3].
Finally, the Hudson-Stahli’s line, described in two KC patients in table 2
was not considered as a sign of the disease but an occasional finding on
slit-lamp examination.
References
(1) Liskova P. Diagnostic criteria of forme fruste keratoconus [electronic
response to Brancati F et al. A locus for autosomal dominant
keratoconus maps to human chromosome 3p14–q13]
(2). Brancati F, Valente EM, Sarkozy A, Feher J, Castori M, Del Duca P, Mingarelli
R, Pizzuti A, Dallapiccola B. A locus for autosomal dominant keratoconus maps to
human chromosome 3p14-q13. J Med Genet 2004;41:188- 192.
(3). Rabinowitz YS.
Videokeratographic indices to aid in screening for keratoconus. J Refract Surg
1995;11:371-379. 4. Levy D, Hutchings H, Rouland JF, Guell J, Burillon C, Arne
JL, Colin J, Laroche L, Montard M, Delbosc B, Aptel I, Ginisty H, Grandjean H,
Malecaze F. Videokeratographic anomalies in familial keratoconus. Ophthalmology
2004;111:867-874.
The authors: Francesco Brancati1,2, Enza Maria Valente1, Anna Sarkozy1,2,
Jànos Fehèr3, Marco Castori1,2, Pietro Del Duca4, Rita Mingarelli1, Antonio
Pizzuti1,2 and Bruno Dallapiccola1,2
1 CSS Hospital, IRCCS, San Giovanni Rotondo
and CSS-Mendel Institute, Rome;
2 Department of Experimental Medicine and
Pathology, University “La Sapienza”, Rome;
3 Department of Ophthalmology,
University "La Sapienza", Rome;
Chen et al. identified R1193Q, a single nucleotide polymorphism (SNP) in the
cardiac sodium channel gene SCN5A, in a group of Han Chinese individuals. The
frequency of SNP R1193Q in this Chinese population is high, reaching 12% (11/94)
[1]. The results confirm our earlier report that SNP R1193Q is present in the
general population [2]. SNP R1193Q occurs within the context of a CpG dimer.
Because the major...
Chen et al. identified R1193Q, a single nucleotide polymorphism (SNP) in the
cardiac sodium channel gene SCN5A, in a group of Han Chinese individuals. The
frequency of SNP R1193Q in this Chinese population is high, reaching 12% (11/94)
[1]. The results confirm our earlier report that SNP R1193Q is present in the
general population [2]. SNP R1193Q occurs within the context of a CpG dimer.
Because the majority of methylation in human DNA occurs at the C in the CpG
dimer, it will interfere with efficient correction of C to T transitions
resulting from 5-methyl cytosine deamination, making this a potential hotspot
for mutation [3].
SCN5A is one of the disease-causing genes for long QT syndrome (LQTS), a cardiac
disorder characterized by the prolonged QT interval on electrocardiograms (ECG)
[4, 5]. LQTS patients have a high risk of syncope and sudden death due to a
specific ventricular tachyarrhythmia, torsade de pointes. LQTS can be classified
into two types, congenital LQTS vs. acquired LQTS. Congenital LQTS is uncommon,
however, acquired LQTS is common, and may account for more than 8% of the
general population [2].
Congenital LQTS is caused by genetic defects. To date, more than 250 different
disease-causing mutations in six genes, KvLQT1 (or KCNQ1), HERG (or KCNH2),
SCN5A, ANKB, KCNE1, and KCNE2 have been identified in LQTS patients and
families, and mutations in these genes may account for approximately 50% to 75%
of congenital LQTS cases [6]. Mutations in KvLQT1, KCNE1, KCNJ2, and HCN4 were
also identified in congenital LQTS patients associated with other symptoms,
including deafness (KvLQT1, KCNE1), periodic paralysis (KCNJ2), and sinus node
dysfunction (HCN4) [6, 7]. Acquired LQTS is caused by drugs and other
environmental factors [2]. To be accurate, the pathogenesis of acquired LQTS is
caused by the interaction between genetic factors (e.g. mutations) and
environmental factors (e.g. drugs). Acquired LQTS is mostly sporadic, which
makes it challenging to identify its genetic factors using classical linkage
analysis and positional cloning. Thus, several studies used the candidate gene
approach, focusing on the genes responsible for congenital LQTS. This approach
appears to be effective. Multiple SNPs in KvLQT1, HERG, SCN5A, KCNE1, and KCNE2
have been identified in patients with acquired LQTS (Table 1). These studies
provide evidence for the hypothesis that acquired and congenital LQTS may share
the same genetic basis, and acquired LQTS may represent a latent form of
congenital LQTS.
Chen et al. reported that one of the nine carriers with SNP R1193Q is affected
with congenital LQTS (QTc = 472 ms) [1]. This finding is consistent with our
results from electrophysiological studies of mutant R1193Q sodium channels. We
studied seven patients with acquired LQTS and identified SNP R1193Q of SCN5A in
one of the patients [2]. As with any other reported studies on acquired LQTS, it
is difficult to provide definitive genetic evidence that R1193 is a cause of
acquired LQTS. An alternative was to provide functional or physiological
evidence to support the hypothesis that R1193Q is a cause of acquired LQTS. We
performed detailed electrophysiological characterization of SNP R1193Q on the
whole-cell or single channel levels in both Xenopus oocytes and mammalian HEK293
cells. Distinct differences were observed between wild type and mutant R1193Q
sodium channels. Similar to two other well-characterized mutations, N1325S and
R1644H causing congenital LQTS, SNP R1193Q leads to the generation of a
late-phase persistent non-inactivating sodium current, and frequent dispersed
reopenings of the channels on the single channel level [2, 8, 9]. These results
predict that R1193Q is capable of causing congenital LQTS. This prediction is
now supported by the finding by Chen et al. that one R1193Q carrier from a
general population is affected with congenital LQTS [1]. Thus, R1193Q is
associated with both congenital and acquired LQTS. Three other mutations, KvLQT1
R555C, SCN5A S1103Y, and SCN5A V1667I are also associated with both congenital
and acquired LQTS (Table 1).
How to explain the finding that several carriers with SNP R1193Q have normal QTc
or borderline QT interval prolongation? The penetrance of mutations associated
with LQTS is highly variable. Many individuals with LQTS mutations display a
normal QT interval or borderline QTc [4, 10]. These individuals are, however, at
a risk of developing LQTS, ventricular arrhythmias and sudden death when exposed
to drugs or other environmental stimuli. It will be interesting to test whether
the individuals who have a normal phenotype, but carry SCN5A SNP R1193Q will
display LQTS when exposed to quinidine or sotalol. Furthermore, if the allele
frequency of Q1193 is 6% in the Chinese population, a case-control association
study can be designed to estimate the risk of this variant to acquired
arrhythmias in this population (note that a case-control study is unrealistic
with an allele frequency of 0.1% in the Caucasian population).
The low frequency of 0.2% in a mostly Caucasian population and a high 12% rate
of SNP R1193Q in a Chinese population may reflect an ethnic difference. It is
important, however, to note that Xie et al. sequenced the SCN5A gene in 120
unrelated Han Chinese individuals, but did not report the identification of
R1193Q in their samples [11]. SNP R1193Q was also identified in a normal
Japanese population (1/48 = 2%) [12], which contradicts with the report by Vatta
et al. that the variant was not present in 100 Japanese controls (please note
that the variant was mislabeled in Vatta et al. report) [13]. Therefore, more
studies with much larger sample sizes are required to obtain the accurate
estimate of the true frequency of SNP R1193Q in the Chinese and Japanese
populations.
In summary, SNP R1193Q of the cardiac sodium channel gene SCN5A is present in
several general populations, although its prevalence rate varies with different
ethnic background, ranging from 0.2% to 12%. Electrophysiological
characteristics of R1193Q predict that individuals carrying R1193Q are at an
increased risk of developing LQTS. Genetic studies provide supportive evidence
for the prediction, however, more studies are clearly warranted to estimate the
relative risk or risk ratio for this variant.
Correspondence to:
Dr Qing Wang
Center for Molecular Genetics/ND4-38, the Cleveland Clinic Foundation,
Cleveland, OH 44195, USA Telephone #: (216) 445-0570; Fax #: (216) 444-2682;
E-mail: wangq2@ccf.org.
References
(1) Chen Y-T, Hwang HW, Niu DM, Hwang BT, Chen JJ, Lin YJ, Shieh RC, Lee MT,
Hung SI, Wu JY. R1193Q of SCN5A, a Brugada and long QT mutation, is a common
polymorphism in Han Chinese. J Med Genet 2004;this issue.
(2) Wang Q, Chen S, Chen Q, Wan X, Shen J, Hoeltge GA, Timur AA, Keating MT,
Kirsch GE. The common SCN5A mutation R1193Q causes LQTS-type
electrophysiological alterations of the cardiac sodium channel. J Med Genet
2004;41(5):e66.
(3) Barker D, Schafer M, White R. Restriction sites containing CpG show a higher
frequency of polymorphism in human DNA. Cell 1984;36(1):131-8.
(4) Chen S, Zhang L, Bryant RM, Vincent GM, Flippin M, Lee JC, Brown E,
Zimmerman F, Rozich R, Szafranski P, Oberti C, Sterba R, Marangi D, Tchou PJ,
Chung MK, Wang Q. KCNQ1 mutations in patients with a family history of lethal
cardiac arrhythmias and sudden death. Clin Genet 2003;63(4):273-82.
(5) Wang Q, Pyeritz RE, Seidman C E, Basson CT. Genetic studies of myocardial
and vascular disease. In: Topol EJ, editor. Textbook of Cardiovascular Medicine.
2nd ed. Philadelphia, PA: Lippincott Williams & Wilkins; 2002. p. 1967-89.
(6) Yong S, Tian X, Wang Q. LQT4 gene: the missing ankyrin. Molecular
Interventions 2003;3(3):131-6.
(7) Ueda K, Nakamura K, Hayashi T, Inagaki N, Takahashi M, Arimura T, Morita H,
Higashiuesato Y, Hirano Y, Yasunami M, Takishita S, Yamashina A, Ohe T, Sunamori
M, Hiraoka M, Kimura A. Functional characterization of a trafficking-defective
HCN4 mutation, D553N, associated with cardiac arrhythmia. J Biol Chem
2004;279(26):27194-8.
(8) Dumaine R, Wang Q, Keating MT, Hartmann HA, Schwartz PJ, Brown AM, Kirsch
GE. Multiple mechanisms of Na+ channel--linked long-QT syndrome. Circ Res
1996;78(5):916-24.
(9) Wang Q, Shen J, Li Z, Timothy K, Vincent GM, Priori SG, Schwartz PJ, Keating
MT. Cardiac sodium channel mutations in patients with long QT syndrome, an
inherited cardiac arrhythmia. Hum Mol Genet 1995;4(9):1603-7.
(10) Vincent GM, Timothy KW, Leppert M, Keating M. The spectrum of symptoms and
QT intervals in carriers of the gene for the long-QT syndrome [see comments]. N
Engl J Med 1992;327(12):846-52.
(11) Xie XD, Wang XX, Chen JZ, Tao M, Shang YP, Guo XG, Zheng LR. [Single
nucleotide polymorphism in SCN5A and the distribution in Chinese Han ethnic
group]. Sheng Li Xue Bao 2004;56(1):36-40.
(12) Takahata T, Yasui-Furukori N, Sasaki S, Igarashi T, Okumura K, Munakata A,
Tateishi T. Nucleotide changes in the translated region of SCN5A from Japanese
patients with Brugada syndrome and control subjects. Life Sci
2003;72(21):2391-9.
(13) Vatta M, Dumaine R, Varghese G, Richard TA, Shimizu W, Aihara N, Nademanee
K, Brugada R, Brugada J, Veerakul G, Li H, Bowles NE, Brugada P, Antzelevitch C,
Towbin JA. Genetic and biophysical basis of sudden unexplained nocturnal death
syndrome (SUNDS), a disease allelic to Brugada syndrome. Hum Mol Genet
2002;11(3):337-45.
(14) Donger C, Denjoy I, Berthet M, Neyroud N, Cruaud C, Bennaceur M, Chivoret
G, Schwartz K, Coumel P, Guicheney P. KVLQT1 C-terminal missense mutation causes
a forme fruste long-QT syndrome. Circulation 1997;96(9):2778-81.
(15) Napolitano C, Schwartz PJ, Brown AM, Ronchetti E, Bianchi L, Pinnavaia A,
Acquaro G, Priori SG. Evidence for a cardiac ion channel mutation underlying
drug-induced QT prolongation and life-threatening arrhythmias. J Cardiovasc
Electrophysiol 2000;11(6):691-6.
(16) Yang P, Kanki H, Drolet B, Yang T, Wei J, Viswanathan PC, Hohnloser SH,
Shimizu W, Schwartz PJ, Stanton M, Murray KT, Norris K, George AL, Jr., Roden
DM. Allelic variants in long-QT disease genes in patients with drug- associated
torsades de pointes. Circulation 2002;105(16):1943-8.
(17) Chevalier P, Rodriguez C, Bontemps L, Miquel M, Kirkorian G, Rousson R,
Potet F, Schott JJ, Baro I, Touboul P. Non-invasive testing of acquired long QT
syndrome: evidence for multiple arrhythmogenic substrates. Cardiovasc Res
2001;50(2):386-98.
(18) Piquette RK. Torsade de pointes induced by cisapride/clarithromycin
interaction. Ann Pharmacother 1999;33(1):22-6.
(19) Paulussen AD, Gilissen RA, Armstrong M, Doevendans PA, Verhasselt P, Smeets
HJ, Schulze-Bahr E, Haverkamp W, Breithardt G, Cohen N, Aerssens J. Genetic
variations of KCNQ1, KCNH2, SCN5A, KCNE1, and KCNE2 in drug-induced long QT
syndrome patients. J Mol Med 2004;82(3):182-8.
(20) Chen S, Chung MK, Martin D, Rozich R, Tchou PJ, Wang Q. SNP S1103Y in the
cardiac sodium channel gene SCN5A is associated with cardiac arrhythmias and
sudden death in a white family. J Med Genet 2002;39(12):913-5.
(21) Splawski I, Timothy K, Tateyama M, Clancy CE, Malhotra A, Beggs AH,
Cappuccio FP, Sagnella GA, Kass R, Keating M. Variant of SCN5A sodium channel
implicated in risk of cardaic arrhythmia. Science 2002;297:1333-6.
(22) Piippo K, Holmstrom S, Swan H, Viitasalo M, Raatikka M, Toivonen L, Kontula
K. Effect of the antimalarial drug halofantrine in the long QT syndrome due to a
mutation of the cardiac sodium channel gene SCN5A. Am J Cardiol
2001;87(7):909-11.
(23) Makita N, Horie M, Nakamura T, Ai T, Sasaki K, Yokoi H, Sakurai M, Sakuma
I, Otani H, Sawa H, Kitabatake A. Drug-induced long-QT syndrome associated with
a subclinical SCN5A mutation. Circulation 2002;106(10):1269-74.
(24) Abbott GW, Sesti F, Splawski I, Buck ME, Lehmann MH, Timothy KW, Keating
MT, Goldstein SA. MiRP1 forms IKr potassium channels with HERG and is associated
with cardiac arrhythmia. Cell 1999;97(2):175-87.
(25) Sesti F, Abbott GW, Wei J, Murray KT, Saksena S, Schwartz PJ, Priori SG,
Roden DM, George AL, Jr., Goldstein SA. A common polymorphism associated with
antibiotic-induced cardiac arrhythmia. Proc Natl Acad Sci U S A 2000
12;97(19):10613-8.
We would like to comment on the letter describing linkage analysis in
autosomal dominant keratoconus presented by Brancati et al. in the March
issue of JMG [1]. The pedigree includes 4 patients with forme fruste
keratoconus and Figure 2 shows the videokeratography of patient III:9 to support
this diagnosis. However, from the data presented this patient appears to have
unilateral simple astigmatism, whi...
We would like to comment on the letter describing linkage analysis in
autosomal dominant keratoconus presented by Brancati et al. in the March
issue of JMG [1]. The pedigree includes 4 patients with forme fruste
keratoconus and Figure 2 shows the videokeratography of patient III:9 to support
this diagnosis. However, from the data presented this patient appears to have
unilateral simple astigmatism, which does not fulfil the diagnostic criteria
defined in the reference provided [2]. Futhermore, there
is little evidence of inferior corneal steepening and the keratometry
values are not unusually high [2,3] Corneal thickness measurements, which
may be reduced in keratoconus, were not presented.
The authors point out that large pedigrees with clinically evident
keratoconus are rare and videokeratography has been used to identify
asymptomatic family members who have early changes of keratoconus. These
patients with forme fruste keratoconus allow pedigrees to be expanded [4,5].
Levy et al. (2004) identified specific parameters that may characterise forme fruste keratoconus
[6]. However it has yet to be shown that these
abnormalities inevitably progress to clinical keratoconus .We consider
that the diagnostic criteria for forme fruste keratoconus should not be
expanded to include patients with simple astigmatism until a link between
the two conditions can be established. The exclusion of patient III:9 from
the study would inevitably result in a reduction in the significance of
the calculated LOD score.
In addition, we would also like to point out that the clinical sign
of a Hudson Stahli line used to describe the clinical features of the
disease in affected patients (Table 2) is usually accepted to be a sign of
a normal cornea. A circular Fleischer ring is the clinical sign that
accompanies the central corneal steepening of keratoconus
Although this letter raises the interesting possibility of a new
locus for familial keratoconus the points that we have highlighted should
be addressed to clarify the diagnosis of the early stages of the disease.
References
(1) Brancati F, Valente EM, Sarkozy A, et al. A locus for autosomal
dominant keratoconus maps to human chromosome 3p14-q13. J Med Genet
2004;41(3):188-92.
(2) Rabinowitz YS. Videokeratographic indices to aid in screening for
keratoconus. J Refract Surg 1995;11(5):371-9.
(3) Rabinowitz YS. The genetics of keratoconus. Ophthalmol Clin North
Am 2003;16(4):607-20, vii.
Recently, Wang
et al. [1] reported R1193Q mutation of SCN5A in one of the 7 patients with
acquired long QT syndrome (LQTS) and suggested that R1193Q is a functional
mutation that can increase the susceptibility to LQTS. The authors fo...
Recently, Wang
et al. [1] reported R1193Q mutation of SCN5A in one of the 7 patients with
acquired long QT syndrome (LQTS) and suggested that R1193Q is a functional
mutation that can increase the susceptibility to LQTS. The authors found 0.2%
(4 of 2087) of the control subjects (in which more than 90% were whites and
only 0.4% were Asians) also carried the mutation and suggested that it may be a
risk factor for LQTS in the general population. The same mutation has been
reported in a Japanese infant with Brugada syndrome having frequent ventricular
fibrillation episodes [2]. They found none of the 100 control subjects of Asian
descent carried the variant.
We have identified the same R1193Q
mutation by direct DNA sequencing of SCN5A in a four-generation family of
Chinese descent with cardiac conduction abnormalities and several instances of
sudden death. However, the mutation is not associated with the disease or any
ECG abnormalities in this family.
We then screened for the presence
of R1193Q mutation in randomly selected control subjects consisting of Han
Chinese by direct DNA sequencing and SNP genotyping using
high-throughput MALDI-TOF mass spectrometry. R1193Q mutation was present
in 12% (11/94) of the subjects with allele frequency of 6%. One of the carriers
was homozygous for the mutation, and all the others were heterozygous. Clinical
studies were available in nine of the 11 carriers (Table 1). Two of them had
abnormal electrocardiograms (ECGs). No known associated risk factors were
identified in subject no.1 for her frequent ventricular premature complexes
(VPCs). Drug-induced prolonged QT-interval was ruled out in subject no.7.
Table 1. Summary of clinical findings in the
R1193Q carriers
1
2
3
4
5
6
7
8
9
Genotype
R/Q
R/Q
R/Q
R/Q
R/Q
R/Q
R/Q
R/Q
Q/Q
Age/Gender
35, F
32, M
45, F
40, F
71, M
26, M
75, F
46, M
76, M
History
of syncope or arrhythmia
¡V*
¡V
¡V
¡V
¡V
¡V
¡V
¡V
¡V
Family
history of sudden death or arrhythmia
¡V
¡V
¡V
¡V
¡V
¡V
¡V
¡V
¡V
ECG findings
Brugada
sign#
¡V
¡V
¡V
¡V
¡V
¡V
¡V
¡V
¡V
Prolonged
QTc
¡V
¡V
¡V
¡V
¡V
¡V
+¡±
¡V
¡V
Others
Frequent VPCs
¡V
¡V
¡V
¡V
¡V
¡V
¡V
¡V
*-
indicated negative findings
#
Type 1~3 ST-segment abnormalities in leads V1-V3 (3)
To
investigate whether sequence variants other than R1193Q had effects on the
clinical presentations, we sequenced all the coding regions of SCN5A in all
carriers and compared the sequences to 4 control subjects. Fifteen SNPs
including six novel ones were identified (Table 2). All novel SNPs were either
located within the introns or showed synonymous amino acid changes and thus
suggesting these SNPs are likely to be normal variants. There was no clear
association of any particular SNPs in the carriers with abnormal ECG as
compared to those with normal tracings; including H558R polymorphism which has
been reported to modify the expression of the arrhythmia causing mutation
[4].
Table 2.SNPs identified in the R1193Q carriers
and control subjects
In summary,
R1193Q, a Brugada and long QT mutation found in patients with other ethnic
background, is a common polymorphism in Han Chinese. Further studies will be
needed to determine whether this variant carries an increased risk for
arrhythmia in the Chinese population.
*Institute of Biomedical Sciences,
Academia Sinica, Taipei, Taiwan.
#Dept
Pediatrics, Taipei Veteran General Hospital, Taipei, Taiwan
¡±Department
of Pediatrics, Duke University Medical Center, Durham, NC, USA
Acknowledgements
The research project
was supported by grants from the National Science & Technology Program forGenomic Medicine, National Science Council, Taiwan (National Clinical
Core and National Genotyping Core),and the Genomics and Proteomics
Program, Academia Sinica.
References
(1)
Wang Q, Chen S, Chen Q, Wan X,
Shen J, Hoeltge GA, Timur AA, Keating MT, Kirsch GE. The common SCN5A mutation
R1193Q causes LQTS-type electrophysiological alterations of the cardiac sodium
channel. J Med Genet 2004; 41(5):e66.
(2) Vatta M, Dumaine R, Varghese G,
Richard TA, Shimizu W, Aihara N, Nademanee K, Brugada R, Brugada J, Veerakul G,
Li H, Bowles NE, Brugada P, Antzelevitch C, Towbin JA. Genetic and biophysical
basis of sudden unexplained nocturnal death syndrome (SUNDS), a disease allelic
to Brugada syndrome. Hum Mol Genet 2002; 11(3): 337-345.
We read with interest a recent report in your journal by
Jakkula et al.[1] on two families of multiple epiphyseal
dysplasia (MED) with the recurrent R718W mutation in COMP.
Key points of the report are: 1) In a family (family 1),
two children presented with muscular weakness and all four
family members with R718W showed moderate rise in plasma
creatine kinase...
We read with interest a recent report in your journal by
Jakkula et al.[1] on two families of multiple epiphyseal
dysplasia (MED) with the recurrent R718W mutation in COMP.
Key points of the report are: 1) In a family (family 1),
two children presented with muscular weakness and all four
family members with R718W showed moderate rise in plasma
creatine kinase (CK), indicating possible association of
myopathy; 2) In both families, the skeletal change is more
severe in the knee joint than in the hip joint. This
observation contradicts to the previous assumption of
genotype-phenotype association, i.e. presence of
dysplastic capital femoral epiphyses and severely irregular
acetabuli is suggestive of COMP mutations, while dysplastic
changes in patients with collagen IX mutation are mainly
seen in the knees and the hips are relatively spared.[2,3]
We previously experienced a MED family with three affected
individuals harboring the same R718W mutation.[4] Here we
describe their clinical and radiographic features for
comparison and further discussion.
The proband was a 64-year-old factory laborer who presented
with bilateral coxalgia at aged 56 years that had started 2
years. His height was 152 cm (nearly Ð3 SD), and his
weight 53.5 kg. He had no history of muscle weakness.
Physical examination had no indication of myopathy. His CK
was 67 (normal range: 50-170) U/L, and was kept within the
normal range during the follow-up period. Radiographic
examination showed severe osteoarthritic (OA) changes in
both hip joints (Figure 1A). The OA changes were minimal in
knee, ankle, foot, shoulder, elbow, hand and wrist joints
(Figure 1B and C). Only an episode of transient pain in the left
knee was noted as well as transient pain in the right
elbow, the right shoulder and the left hand. The hip pain
could not be controlled by medication, and he underwent
bilateral total hip replacement at aged 57 years.
Figure 1 Radiographs of the proband aged 56 years.
A) Hip. Terminal
osteoartritic (OA) changes.
B) The left knee. Mild
dysplasia with flattend femoral chondyle and tibial spine.
C) The right hand. Advanced OA of the MP (metacarpo-
phalangeal) and CM (carpo-metacarpal) joints.
The daughter of the proband, a 37-year-old housewife, had
the bilateral knee pain; the right since the age 32 years
and the left since the age 35 years, respectively. She had
no symptom in other joints. Physical examination revealed
no remarkable findings. Her height was 156 cm, and her
weight 51 kg. The son of the proband was a 33-year-old
factory worker. His height was 161 cm, and his weight 57
kg. He was found to have MED when he visited us because of
the injury of the anterior cruciate ligament of the right
knee. He had occasional vague pain in the right knee on
climbing stairs, but had no symptom in other joints. Both
individuals had no sign and symptom of myopathy. Their CK
levels were normal (80 and 123 U/L). Radiographic
examination identified dysplasia of the hip, knee, and the
1st and 2nd metatarsal joints in both patients (Fig. 2).
Hip dysplasias were marked in the son, but minimal in the
daughter, while knee changes were similar and mild.
Figure 2 Radiographs of the affected family members.
A) and C) The
daughter at aged 37 years.
B) D) and E) The son at aged
33 years.
A) and B) FHip joints. Dysplasia was marked in B,
but minimal in A.
C) and D) Knee joints. Dysplasias of the
knee joints were both mild.
Thus, myopathy was clearly absent in our cases. We consider
the association of myopathy with R718W in the JakkulaÕs
case is fortuitous. Although more than 50 COMP mutations
have been reported, they present MED or more severe
pseudoachondroplasia (PSACH) phenotype, but not myopathy.
The family 1 of the JakkulaÕs a report [1] is the only
exception. COMP is expressed in skeletal muscle, but not
abundant. Even the closely-situated mutation, G719D, did
not present myopathy, though it showed severe PSACH
phenotype.[5]
In our family, the skeletal changes were more severe in the
hip joint, which is consistent with the previous assumption
for the phenotype of the COMP mutation.[2,3] Hip changes
in patients with COMP mutations progress with age as
typically seen in PSACH. It is also true in the cases of
Jakkula et al.[1] The inconsistency of their cases with
the previous assumption may result from the patients' age
at observation. Two affected individuals in the family did
develop severe hip OA in adulthood. Alternatively, it may
be another example of phenotypic variation of the same
mutation.
References
1) Jakkula E, Lohiniva J, Capone A, et al. A recurrent
R718W mutation in COMP results in multiple epiphyseal
dysplasia with mild myopathy: clinical and pathogenetic
overlap with collagen IX mutations. J Med Genet 2003;
40:942-8.
3) Briggs MD, Chapman KL. Pseudoachondroplasia and multiple
epiphyseal dysplasia: mutation review, molecular
interactions, and genotype to phenotype correlations. Hum
Mutat 2002; 19:465-78.
4) Mabuchi A, Manabe N, Haga N, et al. Novel types of COMP
mutations and genotype-phenotype association in
pseudoachondroplasia and multiple epiphyseal dysplasia. Hum
Genet 2003; 112:84-90.
5) Mabuchi A, Haga N, Ikeda T, et al. A novel mutation in
exon 18 of the cartilage oligomeric matrix protein gene
causes a severe pseudoachondroplasia. Am J Med Genet 2001;
104:135-9.
We thank Dr Selvan for his comments [1] on our paper.[2] Cyrillic 3 does indeed use the BRCAPRO and MENDEL models. With regards to our use of BRCAPRO, we would like to draw his attention to the official Cyrillic 3 homepage [3] where it states clearly that the BRCAPRO plug-in calculates risk
based on the “Bayes’ rules of determination of the probability of a mutation, given family history. An estimate of th...
We thank Dr Selvan for his comments [1] on our paper.[2] Cyrillic 3 does indeed use the BRCAPRO and MENDEL models. With regards to our use of BRCAPRO, we would like to draw his attention to the official Cyrillic 3 homepage [3] where it states clearly that the BRCAPRO plug-in calculates risk
based on the “Bayes’ rules of determination of the probability of a mutation, given family history. An estimate of the mutation frequencies in the normal population [4,5] and among Ashkenazi Jews [6] provides the probability of the mutation in the proband, prior to the ascertainment of family history.” In summary, the BRCAPRO software included in Cyrillic 3 gives the option of using three population models on which it bases its results - Claus et al 1994, Ford et al 1998 and Streuwing et al 1997. The guidelines for using BRCAPRO within Cyrillic 3 were followed and we generated results for
unaffected family members using both the Ford and Claus results. As was clearly stated in our paper "Claus and Ford risks were calculated using a plug-in for the Cyrillic 3 package, a software package designed to display family pedigrees for use in clinical genetics and genetic counselling." All results were subsequently described as Claus or Ford. Having to state that they had been derived from a BRCAPRO plug-in every time would have been unwieldy.
In the Study tools section we clearly state: "Computerized risk assessment packages Gail, BRCAPRO (Claus and Ford) and Tyrer-Cuzick were tested on this population". While we were a little ambiguous in the paragraphs before this, we think this sentence is perfectly clear in explaining what we were doing and as the correspondent acknowledges, he is not familiar with Cyrillic 3. We are not sure how much clearer we could have been.
With regard to the rest of the correspondence this appears to be an advert to use the CancerGene software programme. Although Dr Selvan does distinguish between models that merely predict the likelihood of a mutation being present (Myriad I and II, [7]), those that just predict breast cancer risk over time [8,9] and those that purport to do both (BRCAPRO) our paper was only addressing breast cancer risk. Although we did not use a direct download of the BRCAPRO, we have no reason to
believe that the results would have been any different if we had. BRCAPRO appears to underestimate breast cancer risk over time because it assumes that all inherited breast cancer is due to mutations in BRCA1 or BRCA2. The Ford element of this involves the use of the Ford et al [5] penetrance figures in the BRCAPRO algorithm as opposed to those of Claus [8].
References
1. Selvan, M. Breast cancer risk prediction models. Rapid Respone, www.jmedgenet.com.
2. Amir E, Evans DG, Shenton A, Lalloo F, Moran A, Boggis C, Wilson M,
Howell A. Evaluation of breast cancer risk assessment packages in the family history evaluation and screening programme. J Med Genet. 2003 Nov;40(11):807-14.
3. About BRCAPro in Cyrillic 3. Accessed on: 14th April 2004. Details available at:
http://www.cyrillicsoftware.com/support/cy3brca.htm
4. Claus EB, Schildkraut JM, Thompson WD, Risch NJ. The genetic
attributable risk of breast and ovarian cancer. Cancer. 1996;77(11):2318-
24.
5. Ford D, Easton DF, Stratton M, Narod S, Goldgar D, Devilee P, Bishop
DT, Weber B, Lenoir G, Chang-Claude J, Sobol H, Teare MD, Struewing J,
Arason A, Scherneck S, Peto J, Rebbeck TR, Tonin P, Neuhausen S,
Barkardottir R, Eyfjord J, Lynch H, Ponder BA, Gayther SA, Zelada-Hedman M
and the Breast Cancer Linkage Consortium. Genetic Heterogeneity and
Penetrance Analysis of the BRCA1 and BRCA2 genes in breast cancer
families. Am J Hum Genet 1998;62:676-89
6. Struewing JP, Hartge P, Wacholder S, Baker SM, Berlin M, McAdams M,
Timmerman MM, Brody LC, Tucker MA (1997) The risk of cancer associated
with specific mutations of BRCA1 and BRCA2 among Ashkenazi Jews. New
England Journal of Medicine 336:1401-1408
7. Couch FJ, DeShano ML, Blackwood MA, et al. BRCA1 mutations in women
attending clinics that evaluate the risk of breast cancer. N Engl J Med
1997; 336:1409-1415.
8. Claus EB, Risch N, Thompson WD. Autosomal dominant inheritance of
early onset breast cancer:implications for risk prediction. Cancer
1994;73:643-51
9. Gail MH, Brinton LA, Byar DP, et al.: Projecting individualized
probabilities of developing breast cancer for white females who are being
examined annually. J Natl Cancer Inst 1989; 81(24):1879-1886.
Berry DA, Parmigiani G, Sanchez J, et al. Probability of carrying a
mutation of breast-ovarian cancer gene BRCA1 based on family history. J
Natl Cancer Inst 1997; 89(3):227-238.
Cyrillic 3.0 pedigree software. Accessed on: March 30th, 2004.
Details available at:
http://www.exetersoftware.com/cat/cyrillic/cyrillic.html
Frank TS, Manley SA, Olopade OI et al. Sequence analysis of BRCA1 and
BRCA2: Correlation of mutations with family history and ovarian cancer
risk. J Clin Oncol 1998; 16:2417-2425.
Parmigiani G, Berry D, Aguilar O. Determining carrier probabilities
for breast cancer-susceptibility genes BRCA1 and BRCA2. Am J Hum Genet
1998; 62(1): 145-158.
Shattuck-Eidens D, Oliphant A, McClure M et al. BRCA1 sequence
analysis in women at high risk for susceptibility mutations. Risk factor
analysis and implications for genetic testing. JAMA 1997; 278:1242-1250.
The University of Texas Southwestern Medical Center at Dallas.
CancerGene. Available at
http://www3.utsouthwestern.edu/cancergene/index.ht
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Dear Editor
We thank Dr Selvan for his comments [1] on our paper.[2] Cyrillic 3 does indeed use the BRCAPRO and MENDEL models. With regards to our use of BRCAPRO, we would like to draw his attention to the official Cyrillic 3 homepage [3] where it states clearly that the BRCAPRO plug-in calculates risk based on the “Bayes’ rules of determination of the probability of a mutation, given family history. An estimate of th...
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