In a recent article, Debniak et al. have reported data from a case-control study of breast cancer in Poland in which a modest association was observed between breast cancer incidence and the A148T polymorphism in the CDKN2A gene. They observed an odds ratio of 1.3 overall, and an odds ratio of 3.8 for patients diagnosed prior to age 30. The variant was present in 5.1% of cases, versus 3.5% of controls. Their co...
In a recent article, Debniak et al. have reported data from a case-control study of breast cancer in Poland in which a modest association was observed between breast cancer incidence and the A148T polymorphism in the CDKN2A gene. They observed an odds ratio of 1.3 overall, and an odds ratio of 3.8 for patients diagnosed prior to age 30. The variant was present in 5.1% of cases, versus 3.5% of controls. Their control group was a mixture of newborns, and adults from the geographical region in which the cases
were obtained.
We have recently completed an international population-based study of melanoma in which mutation testing of the CDKN2A gene was performed. Our data consist of 3546 probands who were incident cases of melanoma, either a first or a subsequent primary. The frequency of the A148T variant was
observed to be 6.7% (237/3546), slightly higher than the frequency in the cases in the Debniak et al. study. The frequencies were 5.7% (79/1377) in Australian probands, 7.2% (145/1858) in North American probands, and 7.8% (13/166) in Italian probands, although these differences are not
statistically significant. In our study patients reported the occurrences of cancer in first degree relatives. Overall 18 breast cancers were reported among the 760 female relatives of probands with the A148T variant (2.4%) versus 320 (3.0%) among the 10809 female first degree relatives of
the non-carriers.
These data show no indication for an association of this variant with breast cancer in family members of melanoma probands, even after adjusting for age and geographic region. The data also show no evidence of an increased risk in younger family members.
We have read with great interest the excellent review entitled: "Genetics of familial intrahepatic cholestasis syndromes" by van Mil S. W. C. and collaborators, and published in the last issue of Journal of Medical Genetics. [1] In an attempt to complete this very exhaustive
review, we wished to make a few comments:
- concerning delta4-3-Oxosteroid-5beta reductase (AKR1D1) deficiency, since t...
We have read with great interest the excellent review entitled: "Genetics of familial intrahepatic cholestasis syndromes" by van Mil S. W. C. and collaborators, and published in the last issue of Journal of Medical Genetics. [1] In an attempt to complete this very exhaustive
review, we wished to make a few comments:
- concerning delta4-3-Oxosteroid-5beta reductase (AKR1D1) deficiency, since the human gene (AKR1D1, also named SRD5B1) was cloned, two recent publications [2,3] report 5 SRD5B1 mutations responsible for delta4-3-
Oxosteroid-5beta reductase deficiency in 5 patients. These data confirm that the disease is transmitted in a recessive autosomal pattern, and show that when delta4-3-Oxosteroid-5beta reductase deficiency is suspected on the basis of mass spectrometry analysis of urinary bile acids, diagnosis can be confirmed by molecular biology technology. This new diagnostic tool is important because patients with other severe liver diseases may present
an abnormal concentration of bile acids with 3-oxo-delta4 nuclear structure secondary to liver failure and not due to genetically determined enzyme defect.[4] So far it is admitted that only patients with a primary genetic defect may benefit from early primary bile acid therapy in order
to try to correct liver failure and to avoid liver transplantation.[2,3]
- concerning HSD3B7 deficiency, in our experience the patients never exhibit pruritus at presentation and during the disease course. Iatrogenic pruritus may occur under cholic acid therapy in case of accidental overdose. We therefore believe that absence of pruritus in presence of
cholestasis features is a strong sign indicating a possible primary bile acid synthesis defect.[5,6] Since the first report in 2000 of a patient harbouring homozygous HSD3B7 mutation, additional mutations have been identified in 15 patients.[6]
We hope these additional informations will favourably complete this excellent review.
Emmanuel Gonzales, M. D.
Emmanuel Jacquemin, M. D., Ph. D.
Pediatric Hepatology, Bicêtre Hospital, AP-HP, University of Paris XI,
Paris , France
References
van Mil SW, Houwen RH, Klomp LW. Genetics of familial
intrahepatic cholestasis syndromes.
J Med Genet 2005;42(6):449-63.
Lemonde HA, Custard EJ, Bouquet J, Duran M, Overmars H, Scambler PJ, Clayton PT. Mutations in SRD5B1 (AKR1D1), the gene encoding delta(4)-3-oxosteroid 5beta-reductase, in hepatitis and liver failure in infancy.
Gut 2003;52(10):1494-9
Gonzales E, Cresteil D, Baussan C, Dabadie A, Gerhardt MF, Jacquemin E. SRD5B1 (AKR1D1) gene analysis in delta(4)-3-oxosteroid 5beta-reductase deficiency: evidence for primary genetic defect. J Hepatol 2004;40(4):716-8.
Clayton PT, Patel E, Lawson AM, Carruthers RA, Tanner MS,
Strandvik B et al. 3-oxo-delta4 bile acids in liver disease. Lancet
1988;1:1283-4.
Jacquemin E, Setchell KDR, O’Connell NC, Estrada A, Maggiore G,
Schmitz J, Hadchouel M, Bernard O. A new cause of progressive intrahepatic
cholestasis: 3beta-hydroxy-C27-steroid dehydrogenase/isomerase deficiency.
J Pediatr 1994;125:379-84.
Cheng JB, Jacquemin E, Gerhardt M, Nazer H, Cresteil D, Heubi JE,
Setchell KDR, Russell DW. Molecular genetics of 3beta-hydroxy-delta5-C27-
steroid oxidoreductase deficiency in 16 patients with loss of bile acid
synthesis and liver disease. J Clin Endocrinol Metab 2003;88:1833-41.
We read with interest the paper of Kaiser-Rogers et al. [1] in which
they describe two cases of androgenetic/biparental mosaicism. In
their study both cases exhibited the clinicopathological phenotype
of placental mesenchymal dysplasia (PMD) and in both cases the
androgenetic cells were almost exclusively restricted to the
mesenchymal components of the villi, the overlying trophoblast
apparently bein...
We read with interest the paper of Kaiser-Rogers et al. [1] in which
they describe two cases of androgenetic/biparental mosaicism. In
their study both cases exhibited the clinicopathological phenotype
of placental mesenchymal dysplasia (PMD) and in both cases the
androgenetic cells were almost exclusively restricted to the
mesenchymal components of the villi, the overlying trophoblast
apparently being derived from normal biparental cells. In these
respects the cases in their report differ from those of a previous
case of androgenetic/biparental mosaicism described by us [2]
and cited by Kaiser-Rogers et al. [1]
We previously reported a case
of androgenetic / biparental mosaicism resulting in the live birth of a
phenotypically normal girl that, like the present cases, involved
only a single sperm. However, in the case described by us, the
trophoblast was composed of normal biparental cells in only some
villi, the trophoblast of other villi being exclusively androgenetic. In
our case the mesenchymal cells within the villus cores had the
same genotype as the overlying trophoblast in all areas examined,
unlike the present cases in which the mesenchyme and
trophoblast from the same villi appear to be genetically different.
Interestingly our case did not show any pathological evidence of
PMD but the androgenetic villi showed clear evidence of complete
hydatidiform mole phenotype with the biparental villi appearing
morphologically normal. The present study [1] suggests that
androgenetic/biparental mosaicism may be a cause of PMD but it
is clear that it may also have other phenotypic manifestations
according to the distribution of the androgenetic cells within the
placenta.
In our case the female child, now aged four, has
continued to develop normally suggesting that the androgentic
lineage was entirely confined to placental tissue or, if present, has
no pathological effects. Investigation of these rare cases by
molecular techniques may lead to greater understanding of both
normal placental development and the pathogenesis of these
unusual placental disorders.
Wilkinson et al. reported a Bedouin family in which five out of twelve
siblings had a complicated form of autosomal recessive spastic paraplegia. They
presented a uniform picture of early onset hereditary spastic paraplegia (HSP)
that began at 6-11 years of age with dysarthria, distal wasting of the upper
(UL) an...
Wilkinson et al. reported a Bedouin family in which five out of twelve
siblings had a complicated form of autosomal recessive spastic paraplegia. They
presented a uniform picture of early onset hereditary spastic paraplegia (HSP)
that began at 6-11 years of age with dysarthria, distal wasting of the upper
(UL) and lower limb (LL) muscles and emotional lability. Three affected
patients also had intellectual impairment, although it could not be determined
whether this resulted from mental retardation or cognitive decline. After
exclusion of linkage to the known autosomal recessive HSP loci, a genome-wide
scan identified a 22.8 cM region of homozygozity at 12p11.1-12q14 with a
maximum lod score of 5.1 that segregated in all affected individuals. This was
the first family linked to the locus designated SPG26.
We report here a new family of Spanish origin (family 112) with a
complicated form of autosomal recessive HSP linked to the same locus, that
extends the SPG26 phenotype and
refines the critical interval on chromosome 12. The parents, who were first
cousins, had four children, three of whom were affected. The clinical features
are summarized in table 1. Like the family reported by Wilkinson, our patients
presented a uniform clinical picture of early onset HSP that began at 8 to 10
years of age, dysarthria, distal UL and LL muscle wasting and mental
retardation. In addition, our patients also presented posterior capsule
cataracts at birth, peripheral axonal neuropathy, pes cavuswith
equinovarus and cerebellar
signs including axial instability, limb dysmetria, dysarthria, and horizontal
nystagmus. Some patients also had diplopia and altered vestibulo-ocular
reflexes.
The posterior capsule cataracts were assessed by an ophthalmologist.
Peripheral neuropathy was confirmed in patients 09 and 10 by electromyography and
measurement of nerve conduction velocities. Sensory action potentials were
absent in the LL and were greatly reduced in the UL. Sensory and motor nerve
conduction velocities were normal. The disability was severe. Patients 10 and
12 were wheelchair-bound at age 54 and 30, respectively, and patient 09 needed
two canes to walk at age 45. The father had an unremarkable examination at age
90. The mother, a year before she died at 88, had increased reflexes in the LL
and bilateral extensor plantar reflexes, in the absence of gait abnormality,
cataracts or mental retardation. She was therefore considered unaffected. The
unaffected sister had normal clinical examination at age 54.
Intellectual impairment in our patients was noted early and was not
progressive, suggesting mental retardation rather than cognitive deterioration.
The intellectual status of patient 09 was evaluated at age 45. He had a low IQ
(72), left school at age 20 and worked in a centre for the disabled. Patient 12
never went to school because of learning difficulties. In patients 09 and 10,
brain magnetic resonance imaging (MRI) showed cortical atrophy that was unusual
for their age (45 and 52). The cerebellum was normal.
After excluding
mutations in the coding exons of the SPG7
gene and linkage to known autosomal recessive HSP loci, we performed a
genome-wide scan with 400 microsatellite markers spaced approximately every
10cM using standard procedures. Positive multipoint lod score values (Z>1),
calculated with the ALLEGRO software (DECODE Genetics), were obtained for only
3 chromosomal regions. Twenty-eight additional markers were used to explore
these regions, two of which were excluded on the basis of haplotype
reconstruction and lod score values below the threshold of –2 (data not shown).
A maximal multipoint lod score of 2.53 was reached, however, in a 30cM region
flanked by markers D12S1617 and D12S1702. The minimal region of
homozygosity shared by the affected patients was defined by two recombination
events that occurred between markers D12S1617
and D12S345 in patient 12 and between
D12S1585 and D12S1686 in the unaffected sib (individual 11). This region
overlapped with the SPG26 candidate
interval, reducing it from 23 to 20 cM (figure not shown).
In conclusion,
this second family putatively linked to SPG26
extends the clinical phenotype of this complex form of HSP and refines the
critical region. There are more than 200 identified genes in this interval.
More families are therefore needed to further refine the locus and identify the
responsible gene.
Acknowledgments:
The authors are grateful to Drs Sylvie
Forlani and Merle Ruberg for their help as well as the DNA and cell Bank of
IFR-70 and the Centre National de Genotypage (Evry) for their help. PR was
supported by a fellowship from the European Neurological Society and the
Collège de Médecine des Hôpitaux de Paris. This work was funded by the Verum
Foundation (to AB) and the GIS-Rare Diseases Institute (to AD and GS).
1INSERM U679 (former U289) Federative Institute
for Neuroscience Research (IFR70), Salpêtrière Hospital, Paris, France; 2Department
of Genetics Cytogenetics and Embryology, AP-HP, Salpêtrière Hospital, Paris,
France, 3Federation of Neurology, AP-HP, Salpêtrière Hospital,
Paris, France, 4Salpêtrière Medical School, Pierre and Marie Curie
University, Paris, France, 5Department of Neurology and
Neuromuscular Diseases, La Timone Hospital, Marseille, France.
Address correspondence to Pr Alexis Brice, INSERM U679 (former U289),
Hôpital de la Salpêtrière, 47 Bd de l’Hôpital, 75013 Paris, France. E-mail: brice{at}ccr.jussieu.fr
References 1. Wilkinson PA, Simpson
MA, Bastaki L et al. A new locus for autosomal recessive
complicated hereditary spastic paraplegia (SPG26) maps to chromosome
12p11.1-12q14. J Med Genet (2005),42:80-2.
Table 1. Clinical features of the three
members of family 112 with a complicated form of AR-HSP linked to the SPG26 locus.
Sphincter disturbances, abolished myotatic reflexes
in the LL, diplopia
+: Presence of the corresponding sign,
-: Absence of the corresponding sign, NA: Not available, UL: Upper limbs, LL:
Lower limbs, VOR: Vestibulo-ocular reflex.
We read with great interest the paper of Cardinal and colleagues reporting findings of an Australian diagnostic MEN1 genetic testing service.1 Molecular genetic diagnosis of MEN1 has been possible since the identification of the MEN1 gene in 1997.2 In 2001, consensus guidelines outlining clinical criteria for MEN1 mutation testing were published.3 The gu...
We read with great interest the paper of Cardinal and colleagues reporting findings of an Australian diagnostic MEN1 genetic testing service.1 Molecular genetic diagnosis of MEN1 has been possible since the identification of the MEN1 gene in 1997.2 In 2001, consensus guidelines outlining clinical criteria for MEN1 mutation testing were published.3 The guidelines recommend genetic testing in a patient meeting clinical criteria for sporadic MEN1 (the presence of at least 2 out of 3 main MEN1-related tumours, i.e. parathyroid, pancreatic and pituitary) or familial MEN1 (as in sporadic MEN1 plus at least one first-degree relative with one or more main MEN1-related tumours), and in a patient suspicious of MEN1 (multiple parathyroid tumours before age 30, recurrent hyperparathyroidism, gastrinoma or multiple islet cell tumours at any age, and familial isolated hyperparathyroidism). These clinical criteria were defined on the basis of initial research findings, and therefore reports of how the criteria apply in routine clinical practice are important. Similar to the study of Cardinal and colleagues, we have also recently reported a large cohort of patients from the UK, who underwent MEN1 genetic testing at our diagnostic molecular genetics laboratory.4 Likewise, Klein and colleagues have analysed a large diagnostic laboratory series from the USA.5
The MEN1 mutation detection rates in the three diagnostic series are very similar with an overall mutation detection rate of 34%
(Table 1). In patients with 2 or more main MEN1-related tumours (i.e., fulfilling clinical criteria for MEN1), the pick up rates were 26% and 68% for sporadic and familial cases, respectively
(Table 1). These compare to the pick up rates in research cohorts of 52% in sporadic MEN1 and 87% in familial MEN1.4 These findings from the diagnostic laboratory series firmly support the guideline recommendation of MEN1 genetic testing in patients fulfilling the clinical criteria of sporadic or familial MEN1. These series also show that the likelihood of finding a MEN1 mutation increases in the presence of a family history, and also depends upon the clinical features. Patients with 3 main MEN1-related tumours (as compared to those with 2 tumours)4 and patients with a combination of parathyroid & pancreatic tumours (as compared to those with parathyroid and pituitary tumours)4,5 are more likely to yield a positive mutation result.
Whilst the importance of genetic testing in patients fulfilling clinical criteria for sporadic or familial MEN1 is generally accepted, it remains uncertain as to which of the patients with isolated MEN1-related tumours should be screened for an MEN1 mutation. Sporadic isolated MEN1-related tumours (such as parathyroid and pituitary) are fairly common in the general population, and it is not feasible to perform expensive and laborious MEN1 genetic testing in all such cases. Although we did not find MEN1 mutations in the 10 patients with sporadic hyperparathyroidism in our series, Cardinal and colleagues found a MEN1 mutation in one (out of 11) patient with sporadic hyperparathyroidism, suggesting that MEN1 genetic testing should be carried out in patients with early onset, multiglandular parathyroid tumours. Clearly, further studies with much larger cohorts of patients are necessary to establish clinical criteria for MEN1 genetic testing in patients with various sporadic isolated MEN1-related tumours or rarer combinations of different MEN1-related tumours. In many countries molecular genetic testing for MEN1 is carried out by a single national laboratory or a small number of nominated regional centres. This should allow the collection of clinical information from large cohorts of patients undergoing MEN1 mutation analysis, which is likely to facilitate the further definition of clinical criteria for MEN1 genetic testing.
B Vaidya1, AT Hattersley1 & S Ellard2
Departments of 1Endocrinology and 2Molecular Genetics, Royal Devon & Exeter NHS Foundation Trust, Peninsula Medical School, Exeter, UK
References:
1. Cardinal JW, Bergman L, Hayward N, Sweet A, Warner J, Marks L, Learoyd D, Dwight T, Robinson B, Epstein M, Smith M, Teh BT, Cameron DP, Prins JB. A report of a national mutation testing service for the MEN1 gene: clinical resentations and implications for mutation testing. J Med Genet 2005;42:69-74.
2. Chandrasekharappa SC, Guru SC, Manickam P, Olufemi SE, Collins FS, Emmert-Buck MR, Debelenko LV, Zhuang Z, Lubensky IA, Liotta LA, Crabtree JS, Wang Y, Roe BA, Weisemann J, Boguski MS, Agarwal SK, Kester MB, Kim YS, Heppner C, Dong Q, Spiegel AM, Burns AL, Marx SJ. Positional cloning of the gene for multiple endocrine neoplasia-type 1. Science 1997;276:404-7.
3. Brandi ML, Gagel RF, Angeli A, Bilezikian JP, Beck-Peccoz P, Bordi C, Conte-Devolx B, Falchetti A, Gheri RG, Libroia A, Lips CJ, Lombardi G, Mannelli M, Pacini F, Ponder BA, Raue F, Skogseid B, Tamburrano G, Thakker RV, Thompson NW, Tomassetti P, Tonelli F, Wells SA, Marx SJ. Guidelines for diagnosis and therapy of MEN type 1 and type 2. J Clin Endocrinol Metab 2001;86:5658-71.
4. Ellard S, Hattersley AT, Brewer CM, Vaidya, B. Detection of an MEN1 gene mutation depends on clinical features and supports current referral criteria for diagnostic molecular genetic testing. Clin Endocrinol 2005; 62:169-175.
5. Klein RD, Salih S, Bessoni J, Bale AE. Clinical testing for multiple endocrine neoplasia type 1 in a DNA diagnostic laboratory. Genet Med 2005;7:131-8.
We read with interest the article by Cadet and colleagues in which
the authors propose “reverse cascade screening” by newborn screening for
HFE-related hereditary haemochromatosis as an efficient way of detecting
affected adults.[1]
Although HH is an ideal disease for which to undertake screening as
it is common and easy to prevent [2] and there should not be concerns of
insurance discrimina...
We read with interest the article by Cadet and colleagues in which
the authors propose “reverse cascade screening” by newborn screening for
HFE-related hereditary haemochromatosis as an efficient way of detecting
affected adults.[1]
Although HH is an ideal disease for which to undertake screening as
it is common and easy to prevent [2] and there should not be concerns of
insurance discrimination, [3] we believe it is unethical to offer population-
based screening of neonates.
There have been no definite cases of HFE-related haemochromatosis
causing organ damage reported in individuals prior to adulthood and
therefore knowledge of genetic risk is not useful to the individual until
adulthood.[4] There is anecdotal evidence of illness in children being
ascribed to haemochromatosis where it is clearly not the case.[4] Parents
may institute a low iron diet in the mistaken belief that this will
prevent disease in their offspring, a practice that can in fact be harmful
to the child. Finally, because the individual tested did not request the
testing, the information may be forgotten and never be passed on to the at-risk individual.
Since neonatal screening would not be of value to the individual for
at least 20 years and in fact could cause harm because of overzealous
dietary iron restriction or inappropriate phlebotomy, the idea of
screening a neonate to benefit his/her parents is a cause for even more
concern. Screening should be primarily for the benefit of that child, not
a third party.
A more appropriate time to offer screening for haemochromatosis may
be to high school students as we have shown in a school community in
Victoria, Australia.[5] The simple logistics of screening in a high school
enables informed consent since education programs can be easily delivered
in that setting. The individual at risk of haemochromatosis learns of
that result at a time that they can take appropriate steps to prevent iron
overload and thus disease morbidity.
Associate Professor Martin Delatycki
Dr Katie Allen
References
1. Cadet E, Capron D, Gallet M, et al. Reverse cascade screening of
newborns for hereditary haemochromatosis: a model for other late onset
diseases. J Med Genet 2005;42:390-395.
2. Delatycki M, Allen K, Nisselle A, et al. Use of community genetic
screening to prevent HFE-associated hereditary haemochromatosis. Lancet
2005; In Press.
3. Delatycki M, Allen K, Williamson R. Insurance agreement to facilitate
genetic testing. Lancet. 2002;359(9315):1433.
4. Delatycki MB, Powell LW, Allen KJ. Hereditary hemochromatosis genetic
testing of at-risk children: what is the appropriate age? Genet Test
2004;8(2):98-103.
5. Gason AA, Aitken MA, Metcalfe SA, et al. Genetic susceptibility
screening in schools: attitudes of the school community towards hereditary
haemochromatosis. Clin Genet 2005;67(2):166-74.
The conclusions of Rauch et al. [1] with respect to positive genotype-phenotype correlations in
22q11 Deletion Syndrome (22qDS) must be viewed with caution. They report on extensive
fluorescence in situ hybridization (FISH) studies of 350 patients with features of 22qDS ascertained
from 3 sources. Based on a case series of 3 subjects found to have distal (atypical) deletions that
would not have been detecte...
The conclusions of Rauch et al. [1] with respect to positive genotype-phenotype correlations in
22q11 Deletion Syndrome (22qDS) must be viewed with caution. They report on extensive
fluorescence in situ hybridization (FISH) studies of 350 patients with features of 22qDS ascertained
from 3 sources. Based on a case series of 3 subjects found to have distal (atypical) deletions that
would not have been detected using commonly used clinical probes (TUPLE1 or N25), they draw
provocative conclusions about genotype-phenotype associations. The methods used and data
presented do not justify the generalizations made, however.
We have calculated 95% confidence intervals (CIs) (see Table 1.) for the Rauch et al. data presented
since percentages alone may be misleading. CIs allow for an assessment of statistical significance
while accounting for sample size and rarity of events.[2] All of these CIs are non-significant, that
is contain expected values, such as ~18% for positive clinical FISH in conotruncal congenital heart
defect (ctCHD).[3] In addition, the 95% CI for finding three distal deletions in 350 subjects (0.86%)
is 0.18-2.5%, which overlaps the 0-5% frequency reported in the literature, as would the results if
only the sample of genetics referrals with features suggestive of 22qDS were used as the
denominator: 3/77 (3.9%, 95% CI 0.8-8.3%).
To support their assertion of a genotype-phenotype correlation, the authors compared the frequency of atypical distal deletions in a sub-sample (n=63) from the 77 genetics referrals to that in 3 other samples. However, using a selected partial sample prevents a proper interpretation of results, and limits applicability to other populations. If the 22qDS phenotype were the issue, the 77-subject
genetics referral sample should be used, since these subjects had multiple features consistent with
22qDS, as compared to those with a single feature such as ctCHD. On the other hand, if the issue
were whether "typical" 22qDS facial features were related to atypical distal deletions then the
relevant comparison should be between the 14 subjects with "typical" 22qDS facies and the 63
without these facies from the same ascertainment source. As illustrated in Table 2, the frequency
of distal deletions is significantly different (p<_0.05 no="no" correction="correction" for="for" multiple="multiple" comparisons="comparisons" in="in" only="only" _3="_3" non-overlapping="non-overlapping" all="all" of="of" which="which" involve="involve" deletions="deletions" distal="distal" to="to" the="the" _3mb="_3mb" region.="region." conclusion="conclusion" one="one" can="can" draw="draw" from="from" these="these" results="results" is="is" that="that" a="a" _22q11.2="_22q11.2" deletion="deletion" more="more" likely="likely" be="be" found="found" subjects="subjects" with="with" than="than" feature="feature" _22qds.="_22qds." _="_" p="p"/>
The assessment of atypicality of phenotypic expression is challenging in the phenotypically diverse condition 22qDS. Terms such as "atypical" should be used with caution as phenotype will vary with age, completeness of assessment, assessors, and ascertainment.[4] Mild learning difficulties may not be noticeable until later childhood, and absence of psychosis could not be truly determined until well into adulthood (in contrast to Table 3. of Rauch et al. where infants are indicated to have no
psychosis). Hyperactivity is a common feature in children with 22qDS.[5] The sister from the
affected sibpair with two different length 22q11.2 deletions may thus be considered to have typical
neurobehavioural features of 22qDS.
Larger sample sizes and detailed consideration of phenotypic and statistical methodology will be
needed before one can conclude that there is “a significant correlation between deletion site and
phenotypic expression” in 22qDS.
Anne S. Bassett, MD, FRCPC1,2 Rosanna Weksberg, PhD, MD, FRCPC3, 4 Eva W.C. Chow, MD, MPH, FRCPC1,2
1Clinical Genetics Research Program, Centre for Addiction and Mental Health, Toronto, Ontario,
Canada
2Department of Psychiatry, University of Toronto, Toronto, Ontario, Canada
3Division of Clinical and Metabolic Genetics, Hospital for Sick Children, Toronto, Ontario, Canada
4Department of Molecular & Medical Genetics, University of Toronto, Toronto, Ontario, Canada
Table 1. Frequencies from Rauch et al. with percentages and 95% CI
22q11.2 deletions
Number
Sample
%
95 % CI*
Number
Sample
%
95 % CI*
Lower
Bound
Upper
Bound
Lower
Bound
Upper
Bound
Phenotype:
Conotruncal congenital heart defect (ctCHD)
Phenotype:
Genetics referrals with various features
suggestive of 22qDS
Positive clinical FISH
37
200
18.5
13.4
24.6
11
77
14.3
7.4
24.1
3 Mb (common)
33
200
16.5
11.6
22.4
11
77
14.3
7.4
24.1
1.5 Mb (proximal nested)
3
200
1.5
0.3
4.3
0
77
0
0
3.8
Atypical with proximal
extension
1
200
0.5
0.01
2.8
0
77
0
0
3.8
Atypical distal nested
0
200
0
0
1.5
1
77
1.3
0.03
7
Atypical distal to 3 Mb region
0
200
0
0
1.5
2
77
2.6
0.3
9.1
Negative clinical FISH
73
73
100
96
100
Atypical distal nested
0
73
0
0
4
Atypical distal to 3 Mb region
0
73
0
0
4
Multiple congenital anomalies and/or mental
retardation without features of 22qDS
(MCA/MR)
Healthy controls
Positive clinical FISH
0
100
0
0
3
3 Mb (common)
0
100
0
0
3
1.5 Mb (proximal nested)
0
100
0
0
3
Atypical distal nested
0
250
0
0
1.2
0
285
0
0
1
Atypical distal to 3 Mb region
0
300
0
0
1
0
285
0
0
1
*Where the frequency is 0, the 95% CI is one-sided
Table 2. Comparisons of frequency of distal deletions in different samples from Rauch et al. using Fisher’s exact testing*
Distal nested deletion
Deletions distal to
the 3Mb region
Any distal deletion
Group vs Genetics
Referral Sample
Parameters
p-value
Parameters
p-value
Parameters
p-value
Retrospective ctCHD
0/73 vs 1/77
1
0/73 vs 2/77
0.5
0/73 vs 3/77
0.25
Prospective ctCHD
0/200 vs 1/77
0.28
0/200 vs 2/77
0.08
0/200 vs 3/77
0.02
All ctCHD
0/273 vs 1/77
0.22
0/273 vs 2/77
0.048
0/273 vs 3/77
0.01
MCA/MR sample with data
on distally nested deletion
0/250 vs 1/77
0.24
not applicable
not applicable
MCA/MR sample with data
on deletions distal to the 3Mb
region
not applicable
0/300 vs 2/77
0.041
not applicable
Healthy controls
0/285 vs 1/77
0.21
0/285 vs 2/77
0.045
0/285 vs 3/77
0.009
Within the Genetic
Referral Sample
Typical facies vs. non-typical
facies
0/14 vs 1/63
1
0/14 vs 2/63
1
0/14 vs 3/63
1
*Statistically significant results are bolded
References
1. Rauch A, Zink S, Zweier C, Thiel CT, Koch A, Rauch R, Lascorz J, Huffmeier U, Weyand M,
Singer H, Hofbeck M. Systematic assessment of atypical deletions reveals genotype-phenotype
correlation in 22q11.2. J Med Genet 2005.
2. Richardson WS, Wilson MC, Williams JWJ, Moyer VA, Naylor CD. Users' guides to the medical
literature: XXIV. How to use an article on the clinical manifestations of disease. J Am Med Assoc
2000;284:869-875.
3. Goldmuntz E, Clark BJ, Mitchell LE, Jawad AF, Cuneo BF, Reed L, McDonald-McGinn D,
Chien P, Feuer J, Zackai EH, Emanuel BS, Driscoll DA. Frequency of 22q11 deletions in patients
with conotruncal defects. J Am Coll Cardiol 1998;32:492-498.
4. Cohen E, Chow EWC, Weksberg R, Bassett AS. Phenotype of adults with the 22q11 Deletion
Syndrome: A review. Am J Med Genet 1999;86:359-365.
5. Feinstein C, Eliez S, Blasey C, Reiss AL. Psychiatric disorders and behavioral problems in
children with velocardiofacial syndrome: Usefulness as phenotypic indicators of schizophrenia risk.
Biol Psychiatry 2002;51:312-318.
We congratulate the authors for the very descriptive study of
mechanisms implicated in the development of Sotos syndrome. The different
mechanism studied in their population and comparison to the Japanese is
very interesting. Their study group involves subjects mainly belonging to
the UK, France, Germany, Italy, the USA and Australia. As there is no
mention of the ethnic groups studied in the paper...
We congratulate the authors for the very descriptive study of
mechanisms implicated in the development of Sotos syndrome. The different
mechanism studied in their population and comparison to the Japanese is
very interesting. Their study group involves subjects mainly belonging to
the UK, France, Germany, Italy, the USA and Australia. As there is no
mention of the ethnic groups studied in the paper we presume that none of
the subjects are Asian.
The authors mention ~10 % microdeletion as cause of Sotos syndrome in
the UK as compared to large number of microdeletion cases in the Japanese
group.
In the concluding paragraph the authors hypothesize differences in
genome architecture in Japanese and non-Japanese population influencing
microdeletion frequency. Would it be more appropriate to state Caucasian
populations rather than non-Japanese as it would it be too early to
presume that microdeletions do not occur at the same frequency in the
Chinese or Indian subcontinent where more than 50% of the world population
resides.
References
1. K Tatton-Brown, J Douglas, K Coleman, et al. Multiple mechanisms
are implicated in the generation of 5q35 microdeletions in Sotos syndrome.
J Med Genet 2005; 42: 307-313
2. Kurotaki N, Harada N, Shimokawa O et al. Fifty microdeletions
among 112 cases of Sotos syndrome: Low copy repeats possibly mediate the
common deletion. Hum Mutat 2003; 22:378–87
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of
hypoparathyroidism, sensorineural deafness and renal dysplasia has been
recognized as a distinct clinical entity since the report by Bilous et al.
in 1992. In fact, this syndrome was described for the first time in 1977
by Barakat et al. [2]. The syndrome with presumed autosomal rec...
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of
hypoparathyroidism, sensorineural deafness and renal dysplasia has been
recognized as a distinct clinical entity since the report by Bilous et al.
in 1992. In fact, this syndrome was described for the first time in 1977
by Barakat et al. [2]. The syndrome with presumed autosomal recessive
inheritance was later named the “Barakat syndrome” [3-5]. In 1992 Bilous
et al. [6] described a phenotypically similar syndrome in one family with
autosomal dominant inheritance. The mode of inheritance may not be a
fundamental difference, and the disorder in the two families described by
Barakat and Bilous may be due to different mutations in the same
gene [7]. Inheritance in the family described by Barakat et al. could also be
autosomal dominant with reduced penetrance [7]. In 1997 Hasegawa et al. [8]
described a Japanese girl with this syndrome and a de novo deletion of
10p13. They suggested the name “HDR syndrome”. Subsequently, a few more
patients were reported.
Other synonyms for Barakat syndrome include
“Hypoparathyroidism, sensorineural deafness and renal dysplasia”, “HDR
syndrome”, and “Nephrosis, nerve deafness and hypoparathyroidism” [7]. The
syndrome should then consist of hypoparathyroidism, sensorineural deafness
and renal disease, since various renal abnormalities have been described
including nephrotic syndrome, renal dysplasia, hypoplasia and unilateral
renal agenesis, vesicoureteral reflux, pelvicalyceal deformity,
hydronephrosis, and chronic renal failure.
First described by Barakat et al. in 1977, Barakat syndrome is a rare
condition consisting of hypoparathyroidism, sensorineural deafness and
renal disease. The defect is on chromosome 10p15,10p15.1-p14, with
haploinsufficiency or mutation of the GATA3 gene being the underlying cause of the syndrome [7,9].
References
1. Muroya, K, Hasegawa,T, Ito,Y, Nagai,T. Isotani,H, Iwata,Y,
Yamamoto,K, Fujimoto,S, Seishu,S, Fukushima,Y, Hasegawa,Y, Ogata,T. GATA3
abnormalities and the phenotypic spectrum of HDR syndrome. J Med Genet
2001;38:374-80.
2. Barakat, AY, D'Albora, JB, Martin, MM, Jose, PA. Familial
nephrosis, nerve deafness, and hypoparathyroidism. J. Pediat 1977; 91: 61-
4.
3. McKusick V. Mendalian Inheritance in Man, 12th Edition, Volume 2,
Baltimore,The Johns Hopkins University Press, l998.
4. Magnalini SI, et al: Dictionary of Medical Syndromes, 4th
edition,Philadelphia, J.B. Lippencott-Raven, 1997, p 73.
5. Rimoin DL, Connor, JM, Pyeritz RE, Korf BR. Emery and Rimoin’s
Principles and Practice of Medical Genetics. Fourth Edition, Volume 2,
London, Churchill Livingstone, 2002, p2217.
6. Bilous, RW, Murty, G, Parkinson, DB, Thakker, RV, Coulthard, MG,
Burn, J, Mathias, D, Kendall-Taylor, P. Btief report: Autosomal dominant
familial hypoparathyroidism, sensorineural deafness, and renal dysplasia.
New Eng J Med 1992; 327: 1069-74.
7. Online Mendelian Inheritance in Man, Johns Hopkins University
#146255.
8. Hasegawa,T, Hasegawa, Y, Aso, T.; Koto, S, Nagai, T, Tsuchiya, Y,
Kim, K, Ohashi, H, Wakui, K, Fukushima, Y. HDR syndrome
(hypoparathyroidism, sensorineural deafness, renal dysplasia) associated
with del(10)(p13). Am J Med Genet 1997; 73: 416-8.
9. Van Esch, H, Groenen, P, Nesbit, MA, Schuffenhauer, S, Lichtner,
P, Vanderlinden, G, Harding, B, Beetz, R, Bilous, RW, Holdaway, I, Shaw,
NJ, Fryns, J.-P, Van de Ven, W, Thakker, RV, Devriendt, K. GATA3 haplo-
insufficiency causes human HDR syndrome. Nature 2000; 406: 419-22.
We would like to thank Dr. Brooks and his colleagues for their interest in
our article and their valuable remarks. As for the specific issues raised:
We feel that this as a good time to redefine the use of terms
associated with 'coloboma'. We would however suggest that this single word
be used to encompass all entities rather than 'uveal coloboma' for two
reasons. Firstly, 'uveal coloboma' is...
We would like to thank Dr. Brooks and his colleagues for their interest in
our article and their valuable remarks. As for the specific issues raised:
We feel that this as a good time to redefine the use of terms
associated with 'coloboma'. We would however suggest that this single word
be used to encompass all entities rather than 'uveal coloboma' for two
reasons. Firstly, 'uveal coloboma' is too specific and disregards the fact
that non-uveal tissue is often the most important tissue affected -
especially the retina. Secondly, it implies that the uvea has a central
role in aetiology which has yet to be determined. As alluded to in Dr.
Brooks' letter, we agree that more specific terms such as 'bilateral uveal
and retinal coloboma' could then be used to describe specific patients. As
to isolated optic nerve coloboma, whether the entity actually exists or
not or is due to other aetiological processes, awaits to be determined and
so we think the term should continue to be used.
We agree with Dr. Brooks' description of the mechanisms that may be
involved in closure of the optic fissure. We would however point out that
the genes involved do not always act in a positive way to 'mediate
closure' or 'set the stage'. For example, there are ocular coloboma genes
which are negative regulators of transcription, e.g. ZFHX1B (also known as
SIP1) which implies that some genes need to be switched off for closure to
occur [1,2].
Molecular diagnostics will be an important advance in this field.
Whilst it is true that, for ocular coloboma, we are not in a good position
yet to offer a cost-effective service, this may not be too far away. With
mounting experience of single nucleotide polymorphism (SNP) chips in
research laboratories for example (costing in the region of £300/$450 per
DNA sample), it is likely that these will reach clinical diagnostic
laboratory in the near future. As well as mutation screens in specific
coloboma genes, we foresee that 'gene-chips' specific for transcription
factor SNPs could be used to improve the effectiveness of screening. We
look forward to this development.
References
1. Gregory-Evans CY, Vieira H, Dalton R, et al. Ocular coloboma and
high myopia with Hirschsprung disease associated with a novel ZFHX1B
missense mutation and trisomy 21. Am J Med Genet 2004;131A:86-90.
2. Verschueren K, Remacle JE, Collart C, et al. SIP1, a novel zinc
finger/homeodomain repressor, interacts with Smad proteins and binds to
5′-CACCT sequences in candidate target genes. J Biol Chem
274:20489–20498.
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Dear Editor,
We have read with great interest the excellent review entitled: "Genetics of familial intrahepatic cholestasis syndromes" by van Mil S. W. C. and collaborators, and published in the last issue of Journal of Medical Genetics. [1] In an attempt to complete this very exhaustive review, we wished to make a few comments:
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Dear Editor,
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Dear Editor,
The conclusions of Rauch et al. [1] with respect to positive genotype-phenotype correlations in 22q11 Deletion Syndrome (22qDS) must be viewed with caution. They report on extensive fluorescence in situ hybridization (FISH) studies of 350 patients with features of 22qDS ascertained from 3 sources. Based on a case series of 3 subjects found to have distal (atypical) deletions that would not have been detecte...
Dear Editor,
We congratulate the authors for the very descriptive study of mechanisms implicated in the development of Sotos syndrome. The different mechanism studied in their population and comparison to the Japanese is very interesting. Their study group involves subjects mainly belonging to the UK, France, Germany, Italy, the USA and Australia. As there is no mention of the ethnic groups studied in the paper...
Dear Editor,
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of hypoparathyroidism, sensorineural deafness and renal dysplasia has been recognized as a distinct clinical entity since the report by Bilous et al. in 1992. In fact, this syndrome was described for the first time in 1977 by Barakat et al. [2]. The syndrome with presumed autosomal rec...
Dear Editors,
We would like to thank Dr. Brooks and his colleagues for their interest in our article and their valuable remarks. As for the specific issues raised:
We feel that this as a good time to redefine the use of terms associated with 'coloboma'. We would however suggest that this single word be used to encompass all entities rather than 'uveal coloboma' for two reasons. Firstly, 'uveal coloboma' is...
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