We read with great interest the paper of Cardinal and colleagues reporting findings of an Australian diagnostic MEN1 genetic testing service.1 Molecular genetic diagnosis of MEN1 has been possible since the identification of the MEN1 gene in 1997.2 In 2001, consensus guidelines outlining clinical criteria for MEN1 mutation testing were published.3 The gu...
We read with great interest the paper of Cardinal and colleagues reporting findings of an Australian diagnostic MEN1 genetic testing service.1 Molecular genetic diagnosis of MEN1 has been possible since the identification of the MEN1 gene in 1997.2 In 2001, consensus guidelines outlining clinical criteria for MEN1 mutation testing were published.3 The guidelines recommend genetic testing in a patient meeting clinical criteria for sporadic MEN1 (the presence of at least 2 out of 3 main MEN1-related tumours, i.e. parathyroid, pancreatic and pituitary) or familial MEN1 (as in sporadic MEN1 plus at least one first-degree relative with one or more main MEN1-related tumours), and in a patient suspicious of MEN1 (multiple parathyroid tumours before age 30, recurrent hyperparathyroidism, gastrinoma or multiple islet cell tumours at any age, and familial isolated hyperparathyroidism). These clinical criteria were defined on the basis of initial research findings, and therefore reports of how the criteria apply in routine clinical practice are important. Similar to the study of Cardinal and colleagues, we have also recently reported a large cohort of patients from the UK, who underwent MEN1 genetic testing at our diagnostic molecular genetics laboratory.4 Likewise, Klein and colleagues have analysed a large diagnostic laboratory series from the USA.5
The MEN1 mutation detection rates in the three diagnostic series are very similar with an overall mutation detection rate of 34%
(Table 1). In patients with 2 or more main MEN1-related tumours (i.e., fulfilling clinical criteria for MEN1), the pick up rates were 26% and 68% for sporadic and familial cases, respectively
(Table 1). These compare to the pick up rates in research cohorts of 52% in sporadic MEN1 and 87% in familial MEN1.4 These findings from the diagnostic laboratory series firmly support the guideline recommendation of MEN1 genetic testing in patients fulfilling the clinical criteria of sporadic or familial MEN1. These series also show that the likelihood of finding a MEN1 mutation increases in the presence of a family history, and also depends upon the clinical features. Patients with 3 main MEN1-related tumours (as compared to those with 2 tumours)4 and patients with a combination of parathyroid & pancreatic tumours (as compared to those with parathyroid and pituitary tumours)4,5 are more likely to yield a positive mutation result.
Whilst the importance of genetic testing in patients fulfilling clinical criteria for sporadic or familial MEN1 is generally accepted, it remains uncertain as to which of the patients with isolated MEN1-related tumours should be screened for an MEN1 mutation. Sporadic isolated MEN1-related tumours (such as parathyroid and pituitary) are fairly common in the general population, and it is not feasible to perform expensive and laborious MEN1 genetic testing in all such cases. Although we did not find MEN1 mutations in the 10 patients with sporadic hyperparathyroidism in our series, Cardinal and colleagues found a MEN1 mutation in one (out of 11) patient with sporadic hyperparathyroidism, suggesting that MEN1 genetic testing should be carried out in patients with early onset, multiglandular parathyroid tumours. Clearly, further studies with much larger cohorts of patients are necessary to establish clinical criteria for MEN1 genetic testing in patients with various sporadic isolated MEN1-related tumours or rarer combinations of different MEN1-related tumours. In many countries molecular genetic testing for MEN1 is carried out by a single national laboratory or a small number of nominated regional centres. This should allow the collection of clinical information from large cohorts of patients undergoing MEN1 mutation analysis, which is likely to facilitate the further definition of clinical criteria for MEN1 genetic testing.
B Vaidya1, AT Hattersley1 & S Ellard2
Departments of 1Endocrinology and 2Molecular Genetics, Royal Devon & Exeter NHS Foundation Trust, Peninsula Medical School, Exeter, UK
References:
1. Cardinal JW, Bergman L, Hayward N, Sweet A, Warner J, Marks L, Learoyd D, Dwight T, Robinson B, Epstein M, Smith M, Teh BT, Cameron DP, Prins JB. A report of a national mutation testing service for the MEN1 gene: clinical resentations and implications for mutation testing. J Med Genet 2005;42:69-74.
2. Chandrasekharappa SC, Guru SC, Manickam P, Olufemi SE, Collins FS, Emmert-Buck MR, Debelenko LV, Zhuang Z, Lubensky IA, Liotta LA, Crabtree JS, Wang Y, Roe BA, Weisemann J, Boguski MS, Agarwal SK, Kester MB, Kim YS, Heppner C, Dong Q, Spiegel AM, Burns AL, Marx SJ. Positional cloning of the gene for multiple endocrine neoplasia-type 1. Science 1997;276:404-7.
3. Brandi ML, Gagel RF, Angeli A, Bilezikian JP, Beck-Peccoz P, Bordi C, Conte-Devolx B, Falchetti A, Gheri RG, Libroia A, Lips CJ, Lombardi G, Mannelli M, Pacini F, Ponder BA, Raue F, Skogseid B, Tamburrano G, Thakker RV, Thompson NW, Tomassetti P, Tonelli F, Wells SA, Marx SJ. Guidelines for diagnosis and therapy of MEN type 1 and type 2. J Clin Endocrinol Metab 2001;86:5658-71.
4. Ellard S, Hattersley AT, Brewer CM, Vaidya, B. Detection of an MEN1 gene mutation depends on clinical features and supports current referral criteria for diagnostic molecular genetic testing. Clin Endocrinol 2005; 62:169-175.
5. Klein RD, Salih S, Bessoni J, Bale AE. Clinical testing for multiple endocrine neoplasia type 1 in a DNA diagnostic laboratory. Genet Med 2005;7:131-8.
We read with interest the article by Cadet and colleagues in which
the authors propose “reverse cascade screening” by newborn screening for
HFE-related hereditary haemochromatosis as an efficient way of detecting
affected adults.[1]
Although HH is an ideal disease for which to undertake screening as
it is common and easy to prevent [2] and there should not be concerns of
insurance discrimina...
We read with interest the article by Cadet and colleagues in which
the authors propose “reverse cascade screening” by newborn screening for
HFE-related hereditary haemochromatosis as an efficient way of detecting
affected adults.[1]
Although HH is an ideal disease for which to undertake screening as
it is common and easy to prevent [2] and there should not be concerns of
insurance discrimination, [3] we believe it is unethical to offer population-
based screening of neonates.
There have been no definite cases of HFE-related haemochromatosis
causing organ damage reported in individuals prior to adulthood and
therefore knowledge of genetic risk is not useful to the individual until
adulthood.[4] There is anecdotal evidence of illness in children being
ascribed to haemochromatosis where it is clearly not the case.[4] Parents
may institute a low iron diet in the mistaken belief that this will
prevent disease in their offspring, a practice that can in fact be harmful
to the child. Finally, because the individual tested did not request the
testing, the information may be forgotten and never be passed on to the at-risk individual.
Since neonatal screening would not be of value to the individual for
at least 20 years and in fact could cause harm because of overzealous
dietary iron restriction or inappropriate phlebotomy, the idea of
screening a neonate to benefit his/her parents is a cause for even more
concern. Screening should be primarily for the benefit of that child, not
a third party.
A more appropriate time to offer screening for haemochromatosis may
be to high school students as we have shown in a school community in
Victoria, Australia.[5] The simple logistics of screening in a high school
enables informed consent since education programs can be easily delivered
in that setting. The individual at risk of haemochromatosis learns of
that result at a time that they can take appropriate steps to prevent iron
overload and thus disease morbidity.
Associate Professor Martin Delatycki
Dr Katie Allen
References
1. Cadet E, Capron D, Gallet M, et al. Reverse cascade screening of
newborns for hereditary haemochromatosis: a model for other late onset
diseases. J Med Genet 2005;42:390-395.
2. Delatycki M, Allen K, Nisselle A, et al. Use of community genetic
screening to prevent HFE-associated hereditary haemochromatosis. Lancet
2005; In Press.
3. Delatycki M, Allen K, Williamson R. Insurance agreement to facilitate
genetic testing. Lancet. 2002;359(9315):1433.
4. Delatycki MB, Powell LW, Allen KJ. Hereditary hemochromatosis genetic
testing of at-risk children: what is the appropriate age? Genet Test
2004;8(2):98-103.
5. Gason AA, Aitken MA, Metcalfe SA, et al. Genetic susceptibility
screening in schools: attitudes of the school community towards hereditary
haemochromatosis. Clin Genet 2005;67(2):166-74.
The conclusions of Rauch et al. [1] with respect to positive genotype-phenotype correlations in
22q11 Deletion Syndrome (22qDS) must be viewed with caution. They report on extensive
fluorescence in situ hybridization (FISH) studies of 350 patients with features of 22qDS ascertained
from 3 sources. Based on a case series of 3 subjects found to have distal (atypical) deletions that
would not have been detecte...
The conclusions of Rauch et al. [1] with respect to positive genotype-phenotype correlations in
22q11 Deletion Syndrome (22qDS) must be viewed with caution. They report on extensive
fluorescence in situ hybridization (FISH) studies of 350 patients with features of 22qDS ascertained
from 3 sources. Based on a case series of 3 subjects found to have distal (atypical) deletions that
would not have been detected using commonly used clinical probes (TUPLE1 or N25), they draw
provocative conclusions about genotype-phenotype associations. The methods used and data
presented do not justify the generalizations made, however.
We have calculated 95% confidence intervals (CIs) (see Table 1.) for the Rauch et al. data presented
since percentages alone may be misleading. CIs allow for an assessment of statistical significance
while accounting for sample size and rarity of events.[2] All of these CIs are non-significant, that
is contain expected values, such as ~18% for positive clinical FISH in conotruncal congenital heart
defect (ctCHD).[3] In addition, the 95% CI for finding three distal deletions in 350 subjects (0.86%)
is 0.18-2.5%, which overlaps the 0-5% frequency reported in the literature, as would the results if
only the sample of genetics referrals with features suggestive of 22qDS were used as the
denominator: 3/77 (3.9%, 95% CI 0.8-8.3%).
To support their assertion of a genotype-phenotype correlation, the authors compared the frequency of atypical distal deletions in a sub-sample (n=63) from the 77 genetics referrals to that in 3 other samples. However, using a selected partial sample prevents a proper interpretation of results, and limits applicability to other populations. If the 22qDS phenotype were the issue, the 77-subject
genetics referral sample should be used, since these subjects had multiple features consistent with
22qDS, as compared to those with a single feature such as ctCHD. On the other hand, if the issue
were whether "typical" 22qDS facial features were related to atypical distal deletions then the
relevant comparison should be between the 14 subjects with "typical" 22qDS facies and the 63
without these facies from the same ascertainment source. As illustrated in Table 2, the frequency
of distal deletions is significantly different (p<_0.05 no="no" correction="correction" for="for" multiple="multiple" comparisons="comparisons" in="in" only="only" _3="_3" non-overlapping="non-overlapping" all="all" of="of" which="which" involve="involve" deletions="deletions" distal="distal" to="to" the="the" _3mb="_3mb" region.="region." conclusion="conclusion" one="one" can="can" draw="draw" from="from" these="these" results="results" is="is" that="that" a="a" _22q11.2="_22q11.2" deletion="deletion" more="more" likely="likely" be="be" found="found" subjects="subjects" with="with" than="than" feature="feature" _22qds.="_22qds." _="_" p="p"/>
The assessment of atypicality of phenotypic expression is challenging in the phenotypically diverse condition 22qDS. Terms such as "atypical" should be used with caution as phenotype will vary with age, completeness of assessment, assessors, and ascertainment.[4] Mild learning difficulties may not be noticeable until later childhood, and absence of psychosis could not be truly determined until well into adulthood (in contrast to Table 3. of Rauch et al. where infants are indicated to have no
psychosis). Hyperactivity is a common feature in children with 22qDS.[5] The sister from the
affected sibpair with two different length 22q11.2 deletions may thus be considered to have typical
neurobehavioural features of 22qDS.
Larger sample sizes and detailed consideration of phenotypic and statistical methodology will be
needed before one can conclude that there is “a significant correlation between deletion site and
phenotypic expression” in 22qDS.
Anne S. Bassett, MD, FRCPC1,2 Rosanna Weksberg, PhD, MD, FRCPC3, 4 Eva W.C. Chow, MD, MPH, FRCPC1,2
1Clinical Genetics Research Program, Centre for Addiction and Mental Health, Toronto, Ontario,
Canada
2Department of Psychiatry, University of Toronto, Toronto, Ontario, Canada
3Division of Clinical and Metabolic Genetics, Hospital for Sick Children, Toronto, Ontario, Canada
4Department of Molecular & Medical Genetics, University of Toronto, Toronto, Ontario, Canada
Table 1. Frequencies from Rauch et al. with percentages and 95% CI
22q11.2 deletions
Number
Sample
%
95 % CI*
Number
Sample
%
95 % CI*
Lower
Bound
Upper
Bound
Lower
Bound
Upper
Bound
Phenotype:
Conotruncal congenital heart defect (ctCHD)
Phenotype:
Genetics referrals with various features
suggestive of 22qDS
Positive clinical FISH
37
200
18.5
13.4
24.6
11
77
14.3
7.4
24.1
3 Mb (common)
33
200
16.5
11.6
22.4
11
77
14.3
7.4
24.1
1.5 Mb (proximal nested)
3
200
1.5
0.3
4.3
0
77
0
0
3.8
Atypical with proximal
extension
1
200
0.5
0.01
2.8
0
77
0
0
3.8
Atypical distal nested
0
200
0
0
1.5
1
77
1.3
0.03
7
Atypical distal to 3 Mb region
0
200
0
0
1.5
2
77
2.6
0.3
9.1
Negative clinical FISH
73
73
100
96
100
Atypical distal nested
0
73
0
0
4
Atypical distal to 3 Mb region
0
73
0
0
4
Multiple congenital anomalies and/or mental
retardation without features of 22qDS
(MCA/MR)
Healthy controls
Positive clinical FISH
0
100
0
0
3
3 Mb (common)
0
100
0
0
3
1.5 Mb (proximal nested)
0
100
0
0
3
Atypical distal nested
0
250
0
0
1.2
0
285
0
0
1
Atypical distal to 3 Mb region
0
300
0
0
1
0
285
0
0
1
*Where the frequency is 0, the 95% CI is one-sided
Table 2. Comparisons of frequency of distal deletions in different samples from Rauch et al. using Fisher’s exact testing*
Distal nested deletion
Deletions distal to
the 3Mb region
Any distal deletion
Group vs Genetics
Referral Sample
Parameters
p-value
Parameters
p-value
Parameters
p-value
Retrospective ctCHD
0/73 vs 1/77
1
0/73 vs 2/77
0.5
0/73 vs 3/77
0.25
Prospective ctCHD
0/200 vs 1/77
0.28
0/200 vs 2/77
0.08
0/200 vs 3/77
0.02
All ctCHD
0/273 vs 1/77
0.22
0/273 vs 2/77
0.048
0/273 vs 3/77
0.01
MCA/MR sample with data
on distally nested deletion
0/250 vs 1/77
0.24
not applicable
not applicable
MCA/MR sample with data
on deletions distal to the 3Mb
region
not applicable
0/300 vs 2/77
0.041
not applicable
Healthy controls
0/285 vs 1/77
0.21
0/285 vs 2/77
0.045
0/285 vs 3/77
0.009
Within the Genetic
Referral Sample
Typical facies vs. non-typical
facies
0/14 vs 1/63
1
0/14 vs 2/63
1
0/14 vs 3/63
1
*Statistically significant results are bolded
References
1. Rauch A, Zink S, Zweier C, Thiel CT, Koch A, Rauch R, Lascorz J, Huffmeier U, Weyand M,
Singer H, Hofbeck M. Systematic assessment of atypical deletions reveals genotype-phenotype
correlation in 22q11.2. J Med Genet 2005.
2. Richardson WS, Wilson MC, Williams JWJ, Moyer VA, Naylor CD. Users' guides to the medical
literature: XXIV. How to use an article on the clinical manifestations of disease. J Am Med Assoc
2000;284:869-875.
3. Goldmuntz E, Clark BJ, Mitchell LE, Jawad AF, Cuneo BF, Reed L, McDonald-McGinn D,
Chien P, Feuer J, Zackai EH, Emanuel BS, Driscoll DA. Frequency of 22q11 deletions in patients
with conotruncal defects. J Am Coll Cardiol 1998;32:492-498.
4. Cohen E, Chow EWC, Weksberg R, Bassett AS. Phenotype of adults with the 22q11 Deletion
Syndrome: A review. Am J Med Genet 1999;86:359-365.
5. Feinstein C, Eliez S, Blasey C, Reiss AL. Psychiatric disorders and behavioral problems in
children with velocardiofacial syndrome: Usefulness as phenotypic indicators of schizophrenia risk.
Biol Psychiatry 2002;51:312-318.
We congratulate the authors for the very descriptive study of
mechanisms implicated in the development of Sotos syndrome. The different
mechanism studied in their population and comparison to the Japanese is
very interesting. Their study group involves subjects mainly belonging to
the UK, France, Germany, Italy, the USA and Australia. As there is no
mention of the ethnic groups studied in the paper...
We congratulate the authors for the very descriptive study of
mechanisms implicated in the development of Sotos syndrome. The different
mechanism studied in their population and comparison to the Japanese is
very interesting. Their study group involves subjects mainly belonging to
the UK, France, Germany, Italy, the USA and Australia. As there is no
mention of the ethnic groups studied in the paper we presume that none of
the subjects are Asian.
The authors mention ~10 % microdeletion as cause of Sotos syndrome in
the UK as compared to large number of microdeletion cases in the Japanese
group.
In the concluding paragraph the authors hypothesize differences in
genome architecture in Japanese and non-Japanese population influencing
microdeletion frequency. Would it be more appropriate to state Caucasian
populations rather than non-Japanese as it would it be too early to
presume that microdeletions do not occur at the same frequency in the
Chinese or Indian subcontinent where more than 50% of the world population
resides.
References
1. K Tatton-Brown, J Douglas, K Coleman, et al. Multiple mechanisms
are implicated in the generation of 5q35 microdeletions in Sotos syndrome.
J Med Genet 2005; 42: 307-313
2. Kurotaki N, Harada N, Shimokawa O et al. Fifty microdeletions
among 112 cases of Sotos syndrome: Low copy repeats possibly mediate the
common deletion. Hum Mutat 2003; 22:378–87
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of
hypoparathyroidism, sensorineural deafness and renal dysplasia has been
recognized as a distinct clinical entity since the report by Bilous et al.
in 1992. In fact, this syndrome was described for the first time in 1977
by Barakat et al. [2]. The syndrome with presumed autosomal rec...
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of
hypoparathyroidism, sensorineural deafness and renal dysplasia has been
recognized as a distinct clinical entity since the report by Bilous et al.
in 1992. In fact, this syndrome was described for the first time in 1977
by Barakat et al. [2]. The syndrome with presumed autosomal recessive
inheritance was later named the “Barakat syndrome” [3-5]. In 1992 Bilous
et al. [6] described a phenotypically similar syndrome in one family with
autosomal dominant inheritance. The mode of inheritance may not be a
fundamental difference, and the disorder in the two families described by
Barakat and Bilous may be due to different mutations in the same
gene [7]. Inheritance in the family described by Barakat et al. could also be
autosomal dominant with reduced penetrance [7]. In 1997 Hasegawa et al. [8]
described a Japanese girl with this syndrome and a de novo deletion of
10p13. They suggested the name “HDR syndrome”. Subsequently, a few more
patients were reported.
Other synonyms for Barakat syndrome include
“Hypoparathyroidism, sensorineural deafness and renal dysplasia”, “HDR
syndrome”, and “Nephrosis, nerve deafness and hypoparathyroidism” [7]. The
syndrome should then consist of hypoparathyroidism, sensorineural deafness
and renal disease, since various renal abnormalities have been described
including nephrotic syndrome, renal dysplasia, hypoplasia and unilateral
renal agenesis, vesicoureteral reflux, pelvicalyceal deformity,
hydronephrosis, and chronic renal failure.
First described by Barakat et al. in 1977, Barakat syndrome is a rare
condition consisting of hypoparathyroidism, sensorineural deafness and
renal disease. The defect is on chromosome 10p15,10p15.1-p14, with
haploinsufficiency or mutation of the GATA3 gene being the underlying cause of the syndrome [7,9].
References
1. Muroya, K, Hasegawa,T, Ito,Y, Nagai,T. Isotani,H, Iwata,Y,
Yamamoto,K, Fujimoto,S, Seishu,S, Fukushima,Y, Hasegawa,Y, Ogata,T. GATA3
abnormalities and the phenotypic spectrum of HDR syndrome. J Med Genet
2001;38:374-80.
2. Barakat, AY, D'Albora, JB, Martin, MM, Jose, PA. Familial
nephrosis, nerve deafness, and hypoparathyroidism. J. Pediat 1977; 91: 61-
4.
3. McKusick V. Mendalian Inheritance in Man, 12th Edition, Volume 2,
Baltimore,The Johns Hopkins University Press, l998.
4. Magnalini SI, et al: Dictionary of Medical Syndromes, 4th
edition,Philadelphia, J.B. Lippencott-Raven, 1997, p 73.
5. Rimoin DL, Connor, JM, Pyeritz RE, Korf BR. Emery and Rimoin’s
Principles and Practice of Medical Genetics. Fourth Edition, Volume 2,
London, Churchill Livingstone, 2002, p2217.
6. Bilous, RW, Murty, G, Parkinson, DB, Thakker, RV, Coulthard, MG,
Burn, J, Mathias, D, Kendall-Taylor, P. Btief report: Autosomal dominant
familial hypoparathyroidism, sensorineural deafness, and renal dysplasia.
New Eng J Med 1992; 327: 1069-74.
7. Online Mendelian Inheritance in Man, Johns Hopkins University
#146255.
8. Hasegawa,T, Hasegawa, Y, Aso, T.; Koto, S, Nagai, T, Tsuchiya, Y,
Kim, K, Ohashi, H, Wakui, K, Fukushima, Y. HDR syndrome
(hypoparathyroidism, sensorineural deafness, renal dysplasia) associated
with del(10)(p13). Am J Med Genet 1997; 73: 416-8.
9. Van Esch, H, Groenen, P, Nesbit, MA, Schuffenhauer, S, Lichtner,
P, Vanderlinden, G, Harding, B, Beetz, R, Bilous, RW, Holdaway, I, Shaw,
NJ, Fryns, J.-P, Van de Ven, W, Thakker, RV, Devriendt, K. GATA3 haplo-
insufficiency causes human HDR syndrome. Nature 2000; 406: 419-22.
We would like to thank Dr. Brooks and his colleagues for their interest in
our article and their valuable remarks. As for the specific issues raised:
We feel that this as a good time to redefine the use of terms
associated with 'coloboma'. We would however suggest that this single word
be used to encompass all entities rather than 'uveal coloboma' for two
reasons. Firstly, 'uveal coloboma' is...
We would like to thank Dr. Brooks and his colleagues for their interest in
our article and their valuable remarks. As for the specific issues raised:
We feel that this as a good time to redefine the use of terms
associated with 'coloboma'. We would however suggest that this single word
be used to encompass all entities rather than 'uveal coloboma' for two
reasons. Firstly, 'uveal coloboma' is too specific and disregards the fact
that non-uveal tissue is often the most important tissue affected -
especially the retina. Secondly, it implies that the uvea has a central
role in aetiology which has yet to be determined. As alluded to in Dr.
Brooks' letter, we agree that more specific terms such as 'bilateral uveal
and retinal coloboma' could then be used to describe specific patients. As
to isolated optic nerve coloboma, whether the entity actually exists or
not or is due to other aetiological processes, awaits to be determined and
so we think the term should continue to be used.
We agree with Dr. Brooks' description of the mechanisms that may be
involved in closure of the optic fissure. We would however point out that
the genes involved do not always act in a positive way to 'mediate
closure' or 'set the stage'. For example, there are ocular coloboma genes
which are negative regulators of transcription, e.g. ZFHX1B (also known as
SIP1) which implies that some genes need to be switched off for closure to
occur [1,2].
Molecular diagnostics will be an important advance in this field.
Whilst it is true that, for ocular coloboma, we are not in a good position
yet to offer a cost-effective service, this may not be too far away. With
mounting experience of single nucleotide polymorphism (SNP) chips in
research laboratories for example (costing in the region of £300/$450 per
DNA sample), it is likely that these will reach clinical diagnostic
laboratory in the near future. As well as mutation screens in specific
coloboma genes, we foresee that 'gene-chips' specific for transcription
factor SNPs could be used to improve the effectiveness of screening. We
look forward to this development.
References
1. Gregory-Evans CY, Vieira H, Dalton R, et al. Ocular coloboma and
high myopia with Hirschsprung disease associated with a novel ZFHX1B
missense mutation and trisomy 21. Am J Med Genet 2004;131A:86-90.
2. Verschueren K, Remacle JE, Collart C, et al. SIP1, a novel zinc
finger/homeodomain repressor, interacts with Smad proteins and binds to
5′-CACCT sequences in candidate target genes. J Biol Chem
274:20489–20498.
Mattocks et al [1] have used direct DNA sequencing and comparative
sequence analysis to study NF1 patients and claim this study “achieved the
highest recorded mutation detection rate using a single technique for this
gene”. As a key point, the paper states that they studied 91 subjects
fulfilling the NIH NF1 diagnostic criteria and achieved a mutation
detection rate of 89% using automated comparative...
Mattocks et al [1] have used direct DNA sequencing and comparative
sequence analysis to study NF1 patients and claim this study “achieved the
highest recorded mutation detection rate using a single technique for this
gene”. As a key point, the paper states that they studied 91 subjects
fulfilling the NIH NF1 diagnostic criteria and achieved a mutation
detection rate of 89% using automated comparative sequence analysis. They
continue by saying “This detection rate is the highest for a single
technique and is therefore appropriate for routine clinical practice”.
When developing genetic tests, especially for large and complex genes
such as NF1, a large cohort of patients needs to be studied in a
comprehensive way in order to fully understand the spectrum of mutations
present in that gene. From our experience, it is of utmost importance to
analyze the complete gene for the presence of all possible alterations
that may result in a premature stop codon at the mRNA level [2]. A
significant fraction of the mutations in the NF1 gene cause aberrant
splicing and many of them are due to alterations outside the canonically
conserved AG/GT acceptor and donor sequences and even reside deep into the
large introns [2-4]. Also, a number of exonic mutations mimicking
nonsense, missense and even silent mutations at the genomic level have
been described that are splicing mutations and exert their effect by
creating a novel splice donor or acceptor or affect the function of an
exonic splicing enhancer (ESE) or exonic splicing silencer (ESS) [2, 5] .
Although we have now studied over 600 patients fulfilling the NIH criteria
using multiple complementary techniques, we are still challenged and
surprised by the diversity of mutations leading to this disorder.
There have been, unfortunately, some examples in literature where an
alteration is claimed to be a pathogenic mutation, and where later on this
statement needs to be revoked as the alteration is proven to be an
innocent polymorphism [6]. For thousands of hereditary disorders for which
the genes have been cloned, patients await the availability of a reliable
and sensitive diagnostic test and clinical molecular genetic labs
worldwide rely on published reports to help distinguish a polymorphism or
rare benign variant from a deleterious mutation.
This distinction is of utmost importance and has major ethical
implications with respect to the genetic counseling of patients seeking
diagnostic, pre-/oligosymptomatic and prenatal testing.
There is a need for a reliable and sensitive genetic test for the NF1
gene, to help resolve diagnostic dilemmas in patients not fulfilling the
NIH diagnostic criteria, especially young children but also atypical
patients, to determine the affection status of family members of an
affected person and to perform prenatal or pre-implantation diagnosis, if
desired. NF1 is a progressive disorder and many features increase in
frequency with age. CAL-spots are often the first signs of NF1 and may
already be present at birth, increasing in number during the first years
of life. Only about half of patients with sporadic NF1 fulfill the NIH
diagnostic criteria by one year of age and still 5% will not fulfill these
criteria by age 8 years [7]. Waiting for more symptoms to appear with time
in order to ascertain the diagnosis on a clinical basis can be very
stressful for families. Earlier diagnosis of NF1 allows to offer genetic
counseling to parents and relatives earlier as well as to initiate
interventions for learning or developmental problems sooner. Earlier
diagnosis will become even more important once more therapeutic options
become available. A direct genetic test may help to establish the
diagnosis earlier, especially in sporadic patients, but only when the
testing has a high sensitivity, i.e. finds the mutation in (almost) all
patients that eventually will fulfill the NIH criteria (low false negative
results) and, equally important, does not confuse a benign variant with a
pathogenic mutation (no false positive results).
We have identified multiple sequence changes in the paper by Mattocks
et al that are misclassified and hence need rectification to avoid
potential misdiagnoses based on the latter information.
Whereas the title of the paper states that automated comparative sequence
analysis identifies mutations in 89% of NF1 patients, Table 2 describes
these sequence alterations as “potentially significant” sequence
alterations. There also is a Table 3 summarizing polymorphisms found in
the study, which adds to the confusion and further suggests that
alterations in Table 2 are pathogenic mutations, as also the title
alludes. We think we need to make a clear distinction between a
deleterious mutation, an unclassified variant, a rare benign variant and a
polymorphism.
Table 2 contains four silent nucleotide changes: Q282Q, C680C, K1724K
and R1808R. The authors predict that these changes lead to a truncated
peptide, but no experimental evidence is given to proof this. Two of these
sequence changes have been observed by us and others and are definite rare
benign variants. c.5172G>A (K1724K) was first described by Peters et al
[8] as a polymorphism with allele frequencies of 0.99 for c.5172G and 0.01
for c.5172A. Peters et al [8] report on a patient who carries this
polymorphism in exon 28 as well as a frameshift mutation in exon 28. Also,
Fahsold et al [9] describe a patient with the c.5172G>A sequence change
as well as a pathogenic frameshift mutation in exon 37: c.6789del4. One of
us (LM) has observed this sequence change in 2/570 NF1 patients in which a
clearly pathogenic mutation, i.e. c.3216delC and c.1756_1759delACTA was
found as well. Thus, this sequence variant represents an infrequent benign
variant that should not be confused with a bona fide pathogenic mutation.
Mattocks et al demonstrated that the silent nucleotide alteration K1724K
was also found in the affected mother and, thus, segregated with the
disease. However, this example clearly shows that this is not sufficient
to render final evidence of whether a variation is pathogenic. An effect
on splicing should be evidenced before a silent change should be
classified pathogenic.
A second silent sequence change Q282Q (c.846G>A) predicted by Mattocks
et al to result in a truncated protein has been described by Luca et al
[10] to be a polymorphism with a frequency of 2 %. One of us (LM) also
found Q282Q in 2/190 control samples and hence this alteration also has to
be considered as a rare benign variant. By protein truncation testing and
direct cDNA sequencing as described previously [2], we did not observe
production of a truncated peptide nor any effect on splicing due to Q282Q.
In the light of these obvious misclassifications, the prediction of the
truncating effect of the two other silent sequence changes (c.2040C>T
C680C; c.5427G>A R1808R) needs to be considered with great caution,
especially as these changes fulfill none of the classic criteria for
pathogenic mutations: both silent changes have not been reported
previously, they have not been demonstrated to occur de novo in sporadic
patients neither were they shown to segregate with the disease in a given
family and most importantly they were not proven to affect splicing.
Hence, these changes can not be considered pathogenic unless data are
provided rendering evidence that these changes have an effect on the
correct splicing of the NF1 gene. Through the study of over 600 unrelated
NF1 patients fulfilling NIH criteria, we identified 29 patients carrying a
pathogenic truncating mutation as well as a silent mutation, the latter
without observed effect on splicing (Messiaen et al, unpublished results).
Apart from the silent sequence changes, also the classification of
NF1 missense mutations is particularly challenging. Table 2 contains at
least one missense alteration (D176E) that was reported previously to be a
polymorphism [9]. One of us (LM) also identified D176E in 1 NF1 patient
carrying another clearly pathogenic alteration and in 1/190 normal control
samples, confirming D176E is indeed a rare benign variant. We do not
understand why the authors list a patient carrying this sequence change in
Table 2, since in their Table 3 they state that this alteration is a
polymorphism also found in unaffected individuals. Similarly, they list a
patient carrying the missense alteration c.2617C>T (R873C) in Table 2,
while at the same time state in Table 3 that this also is a benign variant
they found in a patient who carried a clearly pathogenic mutation c.1-
14_7del21bp.
Nevertheless, the authors mention both alterations in Table 2 and these
data as well as the formerly mentioned misclassified alterations are taken
into account to come to the conclusion that the technique has a 89%
detection rate.
Y489C (c.1466A>G) is one of the most frequent recurrent mutations in
NF1 patients and was the first well-understood splice mutation that could
be misclassified as a missense mutation if only genomic DNA would be
studied [11]. This mutation results in the creation of a perfect novel
splice donor that is used by the splicing machinery instead of the wild-
type exon 10b donor, and leads to skipping of the last 62 nucleotides of
exon 10b. Y489C has since been reported in many NF1 mutation papers [9, 12
-14]. Hence we do not understand why Mattocks et al describe this
mutation, which they found in 3 NF1 patients, as a missense mutation that
was not previously reported.
G629R (c.1885G>A) can not be considered to be purely a missense
mutation either: Ars et al reported a splice effect in 5 patients [3]. We
observed this splice effect in 3 unrelated patients as well (Messiaen et
al, unpublished results): the observed splicing error is readily
understood by the creation of a novel splice acceptor site by this
mutation, leading to skipping of the first 41 bp of exon 12b.
Recalculating the number of putative missense mutations after
subtraction of the above mentioned misclassifications, Table 2 of the
Mattocks et al. paper still contains a total of 12 different missense
mutations or small deletions of 1 or 2 amino acids that affect 15 patients
fulfilling the NIH diagnostic criteria, i.e H31R, L145P, E337V, C324R,
L532P, S574R, L844P, R1276G, R1276Q, ÄE1438, ÄIY1658-9 and ÄNF2366-7.
Hence, as many as 16.5% (15/91) of the patients fulfilling the NIH
diagnostic criteria, harbor putative missense mutations and small
deletions of one or more amino acids. This number appears quite high in
comparison to other previous reports with high mutation detection rates
(Messiaen et al. 2000, Ars 2000). Thus, it may very well be that a portion
of the novel missense mutations found in the study of Mattocks at al are
splicing mutations. The authors are aware of this possibility and have
developed tools such as a functional splicing assay using a minigene
system to test for the effect on splicing. We do not understand why they
did not apply these tools in this study to achieve a conclusion on the
effect of silent and missense mutations. Furthermore, some of the novel
missense mutations -similarly as D176E, R873C, A2058D - may turn out to be
non pathogenic rare sequence variants. Their finding of different missense
mutations (R873C and A2058D) in 2 NF1 patients carrying another clearly
pathogenic mutation further underscores this possibility.
In the absence of functional assays, rigorous criteria must be
applied before a novel missense alteration in the NF1 gene can be
classified as the disease causing mutation in order to avoid diagnostic
errors.
The following criteria are proposed and applied when clinical testing is
offered: i/ absence of any other possible deleterious mutation after
analysis of the whole coding region. Analysis must include screening for a
total gene deletion, smaller deletions (one to multiple exons deletions),
splice mutations including deep intronic mutations affecting splicing.
This is not achieved when only genomic DNA is studied as described in the
paper by Mattocks et al. If RNA-based mutation analysis reveals an effect
on splicing, the “missense” mutation can be considered to be deleterious;
ii/ absence of the sequence alteration in a large number of unrelated
control samples. This is a necessary but insufficient criterion. Indeed,
we still find novel benign variants on the wild-type NF1 gene, inherited
from the unaffected parent, even after analyzing >600 patients; iii/
support from evolutionary conservation in Mus musculus, Rattus norvegicus,
Takifugu rubripes and Drosophila melanogaster of the amino acid under
consideration as well as support from algorithms such as the ones
developed by Miller and Kumar [15]; iv/ finally and importantly, clinical
and molecular genetic assessment of the family. In case the patient is a
sporadic case, the missense mutation needs to be proven to be a de novo
event and clinical evaluation of both parents needs to show absence of the
disorder in them. In case the patient has a positive family history, the
missense mutation needs to be proven to segregate with the disorder in the
family by analysis of one affected relative.
Taken together, the two main findings summarized in the title of the
paper by Mattocks et al do not withstand a critical review of the data
provided. We believe it is not justified to draw conclusions on detection
rates of the assay presented here unless the pathogenity of the novel
silent and missense alterations contained in Table 2 has been evidenced by
some means. After pointing out a number of obvious misclassifications in
the list it is fair to state that the detection rate is certainly lower
than calculated by the authors.
Furthermore, due to these misclassifications and the lack of evidence that
a fraction of the remaining missense alterations do not affect splicing
it is not justified to use these data to confirm or refute a mutation
cluster in the exons 11-17 pointing to the existence of a novel functional
domain..
We disagree that this single technique as applied here is appropriate
for clinical practice and strongly advocate comprehensive analysis of the
complete coding region before a missense or silent alteration is
considered to be a pathogenic alteration. In the absence of any other
possible pathogenic alteration, missense mutations must be evaluated
according to the criteria discussed above. Silent mutations can not be
considered to be pathogenic unless proof is provided that they are
altering function, e.g. correct splicing. We are hopeful and optimistic
that mutation detection in the NF1 gene will become more easily
accomplished, faster and cheaper once more reliable data become available
and technologies further develop. Then, direct cycle sequencing or
resequencing arrays will allow detecting in a fast and efficient manner a
fair number of pathogenic lesions. However, genomic DNA sequencing assays
alone will not allow deciding on the pathogenicity of missense or silent
alterations, not yet described before. This reply is meant to stimulate
vigilance in the community to avoid potential diagnostic errors.
Ludwine Messiaen (1) and Katharina Wimmer (2)
(1) Dept of Genetics, University of Alabama at Birmingham, US.
(2) Dept of Human Genetics at the Clinical Institute for Medical and
Chemical Laboratory Diagnostics, Medical University Vienna, Austria.
References
(1) Mattocks C, Tarpey P, Bobrow M, Whittaker J. Comparative
sequence analysis (CSA): A new sequence-based method for the
identification and characterization of mutations in DNA. Hum Mutat 2000
Nov;16(5):437-43.
(2) Messiaen LM, Callens T, Mortier G, Beysen D, Vandenbroucke I,
Van Roy N, Speleman F, Paepe AD. Exhaustive mutation analysis of the NF1
gene allows identification of 95% of mutations and reveals a high
frequency of unusual splicing defects. Hum Mutat 2000;15(6):541-55.
(3) Ars E, Serra E, Garcia J, Kruyer H, Gaona A, Lazaro C, Estivill
X. Mutations affecting mRNA splicing are the most common molecular defects
in patients with neurofibromatosis type 1. Hum Mol Genet 2000 Jan
22;9(2):237-47.
(4) Perrin G, Morris MA, Antonarakis SE, Boltshauser E, Hutter P.
Two novel mutations affecting mRNA splicing of the neurofibromatosis type
1 (NF1) gene. Human Mutation 1996;7(2):172-5.
(5) Zatkova A, Messiaen L, Vandenbroucke I, Wieser R, Fonatsch C,
Krainer AR, Wimmer K. Disruption of exonic splicing enhancer elements is
the principal cause of exon skipping associated with seven nonsense or
missense alleles of NF1. Hum Mutat 2004 Nov 2;24(6):491-501.
(6) Lambert J, Naeyaert JM, De Paepe A, Van Coster R, Ferster A,
Song M, Messiaen L. Arg-Cys Substitution at Codon 1246 of the Human Myosin
Va Gene is not Associated with Griscelli Syndrome. J Invest Dermatol 2000
Apr 1;114(4):731-3.
(7) DeBella K, Szudek J, Friedman JM. Use of the national institutes
of health criteria for diagnosis of neurofibromatosis 1 in children.
Pediatrics 2000 Mar;105(3 Pt 1):608-14.
(8) Peters H, Luder A, Harder A, Schuelke M, Tinschert S. Mutation
screening of neurofibromatosis type 1 (NF1) exons 28 and 29 with single
strand conformation polymorphism (SSCP): five novel mutations, one
recurrent transition and two polymorphisms in a panel of 118 unrelated NF1
patients. Mutations in brief no. 229. Online. Hum Mutat 1999;13(3):258.
(9) Fahsold R, Hoffmeyer S, Mischung C, Gille C, Ehlers C,
Kucukceylan N, Abdel-Nour M, Gewies A, Peters H, Kaufmann D, Buske A,
Tinschert S, Nurnberg P. Minor lesion mutational spectrum of the entire
NF1 gene does not explain its high mutability but points to a functional
domain upstream of the GAP-related domain. Am J Hum Genet 2000
Mar;66(3):790-818.
(10) De Luca A, Buccino A, Gianni D, Mangino M, Giustini S, Richetta
A, Divona L, Calvieri S, Mingarelli R, Dallapiccola B. NF1 gene analysis
based on DHPLC. Hum Mutat 2003 Feb;21(2):171-2.
(11) Messiaen L, Callens T, Roux K, Mortier G, de Paepe A,
Abramowicz M, Pericak-Vance M, Vance J, Wallace MR. Exon 10b of the NF1
gene represents a mutational hotspot and harbors a recurrent missense
mutation Y489C associated with aberrant splicing. Genet Med. 1(6), 248-
253. 2004.
Ref Type: Generic
(12) Ars E, Kruyer H, Morell M, Pros E, Serra E, Ravella A, Estivill
X, Lazaro C. Recurrent mutations in the NF1 gene are common among
neurofibromatosis type 1 patients. J Med Genet 2003 Jun;40(6):e82.
(13) Han SS, Cooper DN, Upadhyaya MN. Evaluation of denaturing high
performance liquid chromatography (DHPLC) for the mutational analysis of
the neurofibromatosis type 1 ( NF1) gene. Hum Genet 2001 Nov;109(5):487-
97.
(14) Osborn MJ, Upadhyaya M. Evaluation of the protein truncation
test and mutation detection in the NF1 gene: mutational analysis of 15
known and 40 unknown mutations. Hum Genet 1999 Oct;105(4):327-32.
(15) Miller MP, Kumar S. Understanding human disease mutations
through the use of interspecific genetic variation. Human Molecular
Genetics 2001 Oct 1;10(21):2319-28.
We very much enjoyed reading the review article by Gregory-Evans et
al. on coloboma in the December issue of the Journal of Medical Genetics.
The authors should be commended on the most thorough treatment of the
subject in the clinical genetics literature to date. In reading it,
however, we thought there were a few additional points that required
clarification.
We very much enjoyed reading the review article by Gregory-Evans et
al. on coloboma in the December issue of the Journal of Medical Genetics.
The authors should be commended on the most thorough treatment of the
subject in the clinical genetics literature to date. In reading it,
however, we thought there were a few additional points that required
clarification.
The first is the use of the word “coloboma.” As the authors point
out, this term has been used somewhat imprecisely in the past. We would
propose the term “uveal coloboma” be used for those ocular malformations
that appear to be due to faulty optic fissure closure—including what is
listed as iris coloboma, chorioretinal coloboma, and some of the disorders
listed as “optic nerve colobomas.” The lattermost term is particularly
troublesome to use as it alternatively may mean a uveal coloboma that
extends posteriorly to the optic nerve or some other form of anomalous
nerve (e.g., the anomalous nerve in papillo-renal syndrome (PAX2
mutations) or the morning glory disc anomaly.[1]) They correctly point
out that these latter anomalies may have a different genetic and
embryologic basis. To avoid confusion, it might be appropriate to speak
of these conditions as “uveal coloboma with optic nerve involvement” and
“congenital optic nerve anomlies.”
Our second comment concerns the mechanism of uveal coloboma
formation. The authors do an excellent job at discussing the genes
involved in ocular development that may cause uveal coloboma. However, it
should be born in mind that non-closure of the optic fissure is the
“default state” of the developing optic cup and that failure to close
could result from either direct or indirect causes. The former are those
specific genes that mediate closure of the fissure; the latter are those
genes necessary to “set the stage” for fissure closure. An example of
such a gene is MITF, which, when mutated in mouse can produce an optic cup
with retarded growth such that the two edges of the optic fissure are not
in the right place at the right time to join.[2] An even more indirect
mechanism might result from toxicity from environmental agents.
Lastly, we want to underline the point made at the end of the paper
that we do not have good candidate genes to test on a wholesale basis for
a patient that presents with coloboma. We believe that it is premature to
offer testing for PAX6, CHX10 or SHH, for instance, on all patients, as
the yield would likely be very low and results might be difficult to
interpret.
Congratulations again on an overall superb article.
References
1. Sanyanusin P, Schimmenti LA, McNoe LA, et al. Mutation of the PAX2
gene in a family with optic nerve colobomas, renal anomalies and
vesicoureteral reflux. Nat Genet 1995;9:358-64.
2. Hero I, Farjah M, Scholtz CL. The prenatal development of the
optic fissure in colobomatous microphthalmia. Invest Ophthalmol Vis Sci
1991;32:2622-35.
We thank the authors for their comments on our Letter to the Editor
describing a novel locus for autosomal dominant keratoconus on chromosome 3 [1].
We thoroughly agree with the author’s opinion that simple astigmatism should not
be considered a diagnostic criteria for forme fruste KC. However, none of our 4
patients diagnosed with forme fruste KC had simple astigmatism. In these
patients, t...
We thank the authors for their comments on our Letter to the Editor
describing a novel locus for autosomal dominant keratoconus on chromosome 3 [1].
We thoroughly agree with the author’s opinion that simple astigmatism should not
be considered a diagnostic criteria for forme fruste KC. However, none of our 4
patients diagnosed with forme fruste KC had simple astigmatism. In these
patients, the clinical diagnosis of KC was based on a 1,5 Dioptre (D) increment
scale videokeratographic analysis. In particular, in patient III:9 (whose
videokeratographic picture is shown in the middle panel of figure 2) astigmatism
was irregular on the right eye and regular on the left. A superior-inferior
difference was recorded in both eyes, while in the right the corneal apex was
dislocated in the inferior temporal quadrant of the cornea. Thus, this patient
fulfil the diagnostic criteria for forme fruste KC [2]. Figure 2 showed these
findings, although some details could have been lost in the printed version. We
confirmed these data in patient III:9 with a more sensitive quantitative
evaluation of the same videokeratography using a colorcoded map with 0,45 D
increments. This analysis showed that the highest keratometric values in dioptre
were 42,70 D on the superior and 43,60 D on the inferior cornea of the right eye
and 43,60 D in the superior and 45,0 D on the inferior cornea of the left eye.
Taken together these data point out the role of videokeratography in the
diagnosis of subtle corneal abnormalities such as forme fruste KC, in agreement
with Levy and coworkers who recommend to achieve a detection rate of at least
0.5 D increment scale for forme fruste KC [3].
Finally, the Hudson-Stahli’s line, described in two KC patients in table 2
was not considered as a sign of the disease but an occasional finding on
slit-lamp examination.
References
(1) Liskova P. Diagnostic criteria of forme fruste keratoconus [electronic
response to Brancati F et al. A locus for autosomal dominant
keratoconus maps to human chromosome 3p14–q13]
(2). Brancati F, Valente EM, Sarkozy A, Feher J, Castori M, Del Duca P, Mingarelli
R, Pizzuti A, Dallapiccola B. A locus for autosomal dominant keratoconus maps to
human chromosome 3p14-q13. J Med Genet 2004;41:188- 192.
(3). Rabinowitz YS.
Videokeratographic indices to aid in screening for keratoconus. J Refract Surg
1995;11:371-379. 4. Levy D, Hutchings H, Rouland JF, Guell J, Burillon C, Arne
JL, Colin J, Laroche L, Montard M, Delbosc B, Aptel I, Ginisty H, Grandjean H,
Malecaze F. Videokeratographic anomalies in familial keratoconus. Ophthalmology
2004;111:867-874.
The authors: Francesco Brancati1,2, Enza Maria Valente1, Anna Sarkozy1,2,
Jànos Fehèr3, Marco Castori1,2, Pietro Del Duca4, Rita Mingarelli1, Antonio
Pizzuti1,2 and Bruno Dallapiccola1,2
1 CSS Hospital, IRCCS, San Giovanni Rotondo
and CSS-Mendel Institute, Rome;
2 Department of Experimental Medicine and
Pathology, University “La Sapienza”, Rome;
3 Department of Ophthalmology,
University "La Sapienza", Rome;
Chen et al. identified R1193Q, a single nucleotide polymorphism (SNP) in the
cardiac sodium channel gene SCN5A, in a group of Han Chinese individuals. The
frequency of SNP R1193Q in this Chinese population is high, reaching 12% (11/94)
[1]. The results confirm our earlier report that SNP R1193Q is present in the
general population [2]. SNP R1193Q occurs within the context of a CpG dimer.
Because the major...
Chen et al. identified R1193Q, a single nucleotide polymorphism (SNP) in the
cardiac sodium channel gene SCN5A, in a group of Han Chinese individuals. The
frequency of SNP R1193Q in this Chinese population is high, reaching 12% (11/94)
[1]. The results confirm our earlier report that SNP R1193Q is present in the
general population [2]. SNP R1193Q occurs within the context of a CpG dimer.
Because the majority of methylation in human DNA occurs at the C in the CpG
dimer, it will interfere with efficient correction of C to T transitions
resulting from 5-methyl cytosine deamination, making this a potential hotspot
for mutation [3].
SCN5A is one of the disease-causing genes for long QT syndrome (LQTS), a cardiac
disorder characterized by the prolonged QT interval on electrocardiograms (ECG)
[4, 5]. LQTS patients have a high risk of syncope and sudden death due to a
specific ventricular tachyarrhythmia, torsade de pointes. LQTS can be classified
into two types, congenital LQTS vs. acquired LQTS. Congenital LQTS is uncommon,
however, acquired LQTS is common, and may account for more than 8% of the
general population [2].
Congenital LQTS is caused by genetic defects. To date, more than 250 different
disease-causing mutations in six genes, KvLQT1 (or KCNQ1), HERG (or KCNH2),
SCN5A, ANKB, KCNE1, and KCNE2 have been identified in LQTS patients and
families, and mutations in these genes may account for approximately 50% to 75%
of congenital LQTS cases [6]. Mutations in KvLQT1, KCNE1, KCNJ2, and HCN4 were
also identified in congenital LQTS patients associated with other symptoms,
including deafness (KvLQT1, KCNE1), periodic paralysis (KCNJ2), and sinus node
dysfunction (HCN4) [6, 7]. Acquired LQTS is caused by drugs and other
environmental factors [2]. To be accurate, the pathogenesis of acquired LQTS is
caused by the interaction between genetic factors (e.g. mutations) and
environmental factors (e.g. drugs). Acquired LQTS is mostly sporadic, which
makes it challenging to identify its genetic factors using classical linkage
analysis and positional cloning. Thus, several studies used the candidate gene
approach, focusing on the genes responsible for congenital LQTS. This approach
appears to be effective. Multiple SNPs in KvLQT1, HERG, SCN5A, KCNE1, and KCNE2
have been identified in patients with acquired LQTS (Table 1). These studies
provide evidence for the hypothesis that acquired and congenital LQTS may share
the same genetic basis, and acquired LQTS may represent a latent form of
congenital LQTS.
Chen et al. reported that one of the nine carriers with SNP R1193Q is affected
with congenital LQTS (QTc = 472 ms) [1]. This finding is consistent with our
results from electrophysiological studies of mutant R1193Q sodium channels. We
studied seven patients with acquired LQTS and identified SNP R1193Q of SCN5A in
one of the patients [2]. As with any other reported studies on acquired LQTS, it
is difficult to provide definitive genetic evidence that R1193 is a cause of
acquired LQTS. An alternative was to provide functional or physiological
evidence to support the hypothesis that R1193Q is a cause of acquired LQTS. We
performed detailed electrophysiological characterization of SNP R1193Q on the
whole-cell or single channel levels in both Xenopus oocytes and mammalian HEK293
cells. Distinct differences were observed between wild type and mutant R1193Q
sodium channels. Similar to two other well-characterized mutations, N1325S and
R1644H causing congenital LQTS, SNP R1193Q leads to the generation of a
late-phase persistent non-inactivating sodium current, and frequent dispersed
reopenings of the channels on the single channel level [2, 8, 9]. These results
predict that R1193Q is capable of causing congenital LQTS. This prediction is
now supported by the finding by Chen et al. that one R1193Q carrier from a
general population is affected with congenital LQTS [1]. Thus, R1193Q is
associated with both congenital and acquired LQTS. Three other mutations, KvLQT1
R555C, SCN5A S1103Y, and SCN5A V1667I are also associated with both congenital
and acquired LQTS (Table 1).
How to explain the finding that several carriers with SNP R1193Q have normal QTc
or borderline QT interval prolongation? The penetrance of mutations associated
with LQTS is highly variable. Many individuals with LQTS mutations display a
normal QT interval or borderline QTc [4, 10]. These individuals are, however, at
a risk of developing LQTS, ventricular arrhythmias and sudden death when exposed
to drugs or other environmental stimuli. It will be interesting to test whether
the individuals who have a normal phenotype, but carry SCN5A SNP R1193Q will
display LQTS when exposed to quinidine or sotalol. Furthermore, if the allele
frequency of Q1193 is 6% in the Chinese population, a case-control association
study can be designed to estimate the risk of this variant to acquired
arrhythmias in this population (note that a case-control study is unrealistic
with an allele frequency of 0.1% in the Caucasian population).
The low frequency of 0.2% in a mostly Caucasian population and a high 12% rate
of SNP R1193Q in a Chinese population may reflect an ethnic difference. It is
important, however, to note that Xie et al. sequenced the SCN5A gene in 120
unrelated Han Chinese individuals, but did not report the identification of
R1193Q in their samples [11]. SNP R1193Q was also identified in a normal
Japanese population (1/48 = 2%) [12], which contradicts with the report by Vatta
et al. that the variant was not present in 100 Japanese controls (please note
that the variant was mislabeled in Vatta et al. report) [13]. Therefore, more
studies with much larger sample sizes are required to obtain the accurate
estimate of the true frequency of SNP R1193Q in the Chinese and Japanese
populations.
In summary, SNP R1193Q of the cardiac sodium channel gene SCN5A is present in
several general populations, although its prevalence rate varies with different
ethnic background, ranging from 0.2% to 12%. Electrophysiological
characteristics of R1193Q predict that individuals carrying R1193Q are at an
increased risk of developing LQTS. Genetic studies provide supportive evidence
for the prediction, however, more studies are clearly warranted to estimate the
relative risk or risk ratio for this variant.
Correspondence to:
Dr Qing Wang
Center for Molecular Genetics/ND4-38, the Cleveland Clinic Foundation,
Cleveland, OH 44195, USA Telephone #: (216) 445-0570; Fax #: (216) 444-2682;
E-mail: wangq2@ccf.org.
References
(1) Chen Y-T, Hwang HW, Niu DM, Hwang BT, Chen JJ, Lin YJ, Shieh RC, Lee MT,
Hung SI, Wu JY. R1193Q of SCN5A, a Brugada and long QT mutation, is a common
polymorphism in Han Chinese. J Med Genet 2004;this issue.
(2) Wang Q, Chen S, Chen Q, Wan X, Shen J, Hoeltge GA, Timur AA, Keating MT,
Kirsch GE. The common SCN5A mutation R1193Q causes LQTS-type
electrophysiological alterations of the cardiac sodium channel. J Med Genet
2004;41(5):e66.
(3) Barker D, Schafer M, White R. Restriction sites containing CpG show a higher
frequency of polymorphism in human DNA. Cell 1984;36(1):131-8.
(4) Chen S, Zhang L, Bryant RM, Vincent GM, Flippin M, Lee JC, Brown E,
Zimmerman F, Rozich R, Szafranski P, Oberti C, Sterba R, Marangi D, Tchou PJ,
Chung MK, Wang Q. KCNQ1 mutations in patients with a family history of lethal
cardiac arrhythmias and sudden death. Clin Genet 2003;63(4):273-82.
(5) Wang Q, Pyeritz RE, Seidman C E, Basson CT. Genetic studies of myocardial
and vascular disease. In: Topol EJ, editor. Textbook of Cardiovascular Medicine.
2nd ed. Philadelphia, PA: Lippincott Williams & Wilkins; 2002. p. 1967-89.
(6) Yong S, Tian X, Wang Q. LQT4 gene: the missing ankyrin. Molecular
Interventions 2003;3(3):131-6.
(7) Ueda K, Nakamura K, Hayashi T, Inagaki N, Takahashi M, Arimura T, Morita H,
Higashiuesato Y, Hirano Y, Yasunami M, Takishita S, Yamashina A, Ohe T, Sunamori
M, Hiraoka M, Kimura A. Functional characterization of a trafficking-defective
HCN4 mutation, D553N, associated with cardiac arrhythmia. J Biol Chem
2004;279(26):27194-8.
(8) Dumaine R, Wang Q, Keating MT, Hartmann HA, Schwartz PJ, Brown AM, Kirsch
GE. Multiple mechanisms of Na+ channel--linked long-QT syndrome. Circ Res
1996;78(5):916-24.
(9) Wang Q, Shen J, Li Z, Timothy K, Vincent GM, Priori SG, Schwartz PJ, Keating
MT. Cardiac sodium channel mutations in patients with long QT syndrome, an
inherited cardiac arrhythmia. Hum Mol Genet 1995;4(9):1603-7.
(10) Vincent GM, Timothy KW, Leppert M, Keating M. The spectrum of symptoms and
QT intervals in carriers of the gene for the long-QT syndrome [see comments]. N
Engl J Med 1992;327(12):846-52.
(11) Xie XD, Wang XX, Chen JZ, Tao M, Shang YP, Guo XG, Zheng LR. [Single
nucleotide polymorphism in SCN5A and the distribution in Chinese Han ethnic
group]. Sheng Li Xue Bao 2004;56(1):36-40.
(12) Takahata T, Yasui-Furukori N, Sasaki S, Igarashi T, Okumura K, Munakata A,
Tateishi T. Nucleotide changes in the translated region of SCN5A from Japanese
patients with Brugada syndrome and control subjects. Life Sci
2003;72(21):2391-9.
(13) Vatta M, Dumaine R, Varghese G, Richard TA, Shimizu W, Aihara N, Nademanee
K, Brugada R, Brugada J, Veerakul G, Li H, Bowles NE, Brugada P, Antzelevitch C,
Towbin JA. Genetic and biophysical basis of sudden unexplained nocturnal death
syndrome (SUNDS), a disease allelic to Brugada syndrome. Hum Mol Genet
2002;11(3):337-45.
(14) Donger C, Denjoy I, Berthet M, Neyroud N, Cruaud C, Bennaceur M, Chivoret
G, Schwartz K, Coumel P, Guicheney P. KVLQT1 C-terminal missense mutation causes
a forme fruste long-QT syndrome. Circulation 1997;96(9):2778-81.
(15) Napolitano C, Schwartz PJ, Brown AM, Ronchetti E, Bianchi L, Pinnavaia A,
Acquaro G, Priori SG. Evidence for a cardiac ion channel mutation underlying
drug-induced QT prolongation and life-threatening arrhythmias. J Cardiovasc
Electrophysiol 2000;11(6):691-6.
(16) Yang P, Kanki H, Drolet B, Yang T, Wei J, Viswanathan PC, Hohnloser SH,
Shimizu W, Schwartz PJ, Stanton M, Murray KT, Norris K, George AL, Jr., Roden
DM. Allelic variants in long-QT disease genes in patients with drug- associated
torsades de pointes. Circulation 2002;105(16):1943-8.
(17) Chevalier P, Rodriguez C, Bontemps L, Miquel M, Kirkorian G, Rousson R,
Potet F, Schott JJ, Baro I, Touboul P. Non-invasive testing of acquired long QT
syndrome: evidence for multiple arrhythmogenic substrates. Cardiovasc Res
2001;50(2):386-98.
(18) Piquette RK. Torsade de pointes induced by cisapride/clarithromycin
interaction. Ann Pharmacother 1999;33(1):22-6.
(19) Paulussen AD, Gilissen RA, Armstrong M, Doevendans PA, Verhasselt P, Smeets
HJ, Schulze-Bahr E, Haverkamp W, Breithardt G, Cohen N, Aerssens J. Genetic
variations of KCNQ1, KCNH2, SCN5A, KCNE1, and KCNE2 in drug-induced long QT
syndrome patients. J Mol Med 2004;82(3):182-8.
(20) Chen S, Chung MK, Martin D, Rozich R, Tchou PJ, Wang Q. SNP S1103Y in the
cardiac sodium channel gene SCN5A is associated with cardiac arrhythmias and
sudden death in a white family. J Med Genet 2002;39(12):913-5.
(21) Splawski I, Timothy K, Tateyama M, Clancy CE, Malhotra A, Beggs AH,
Cappuccio FP, Sagnella GA, Kass R, Keating M. Variant of SCN5A sodium channel
implicated in risk of cardaic arrhythmia. Science 2002;297:1333-6.
(22) Piippo K, Holmstrom S, Swan H, Viitasalo M, Raatikka M, Toivonen L, Kontula
K. Effect of the antimalarial drug halofantrine in the long QT syndrome due to a
mutation of the cardiac sodium channel gene SCN5A. Am J Cardiol
2001;87(7):909-11.
(23) Makita N, Horie M, Nakamura T, Ai T, Sasaki K, Yokoi H, Sakurai M, Sakuma
I, Otani H, Sawa H, Kitabatake A. Drug-induced long-QT syndrome associated with
a subclinical SCN5A mutation. Circulation 2002;106(10):1269-74.
(24) Abbott GW, Sesti F, Splawski I, Buck ME, Lehmann MH, Timothy KW, Keating
MT, Goldstein SA. MiRP1 forms IKr potassium channels with HERG and is associated
with cardiac arrhythmia. Cell 1999;97(2):175-87.
(25) Sesti F, Abbott GW, Wei J, Murray KT, Saksena S, Schwartz PJ, Priori SG,
Roden DM, George AL, Jr., Goldstein SA. A common polymorphism associated with
antibiotic-induced cardiac arrhythmia. Proc Natl Acad Sci U S A 2000
12;97(19):10613-8.
Dear Editor,
We read with great interest the paper of Cardinal and colleagues reporting findings of an Australian diagnostic MEN1 genetic testing service.1 Molecular genetic diagnosis of MEN1 has been possible since the identification of the MEN1 gene in 1997.2 In 2001, consensus guidelines outlining clinical criteria for MEN1 mutation testing were published.3 The gu...
Dear Editor,
We read with interest the article by Cadet and colleagues in which the authors propose “reverse cascade screening” by newborn screening for HFE-related hereditary haemochromatosis as an efficient way of detecting affected adults.[1]
Although HH is an ideal disease for which to undertake screening as it is common and easy to prevent [2] and there should not be concerns of insurance discrimina...
Dear Editor,
The conclusions of Rauch et al. [1] with respect to positive genotype-phenotype correlations in 22q11 Deletion Syndrome (22qDS) must be viewed with caution. They report on extensive fluorescence in situ hybridization (FISH) studies of 350 patients with features of 22qDS ascertained from 3 sources. Based on a case series of 3 subjects found to have distal (atypical) deletions that would not have been detecte...
Dear Editor,
We congratulate the authors for the very descriptive study of mechanisms implicated in the development of Sotos syndrome. The different mechanism studied in their population and comparison to the Japanese is very interesting. Their study group involves subjects mainly belonging to the UK, France, Germany, Italy, the USA and Australia. As there is no mention of the ethnic groups studied in the paper...
Dear Editor,
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of hypoparathyroidism, sensorineural deafness and renal dysplasia has been recognized as a distinct clinical entity since the report by Bilous et al. in 1992. In fact, this syndrome was described for the first time in 1977 by Barakat et al. [2]. The syndrome with presumed autosomal rec...
Dear Editors,
We would like to thank Dr. Brooks and his colleagues for their interest in our article and their valuable remarks. As for the specific issues raised:
We feel that this as a good time to redefine the use of terms associated with 'coloboma'. We would however suggest that this single word be used to encompass all entities rather than 'uveal coloboma' for two reasons. Firstly, 'uveal coloboma' is...
Dear Editor
Mattocks et al [1] have used direct DNA sequencing and comparative sequence analysis to study NF1 patients and claim this study “achieved the highest recorded mutation detection rate using a single technique for this gene”. As a key point, the paper states that they studied 91 subjects fulfilling the NIH NF1 diagnostic criteria and achieved a mutation detection rate of 89% using automated comparative...
Dear Editors
We very much enjoyed reading the review article by Gregory-Evans et al. on coloboma in the December issue of the Journal of Medical Genetics. The authors should be commended on the most thorough treatment of the subject in the clinical genetics literature to date. In reading it, however, we thought there were a few additional points that required clarification.
The first is the use of t...
Dear Editor
We thank the authors for their comments on our Letter to the Editor describing a novel locus for autosomal dominant keratoconus on chromosome 3 [1]. We thoroughly agree with the author’s opinion that simple astigmatism should not be considered a diagnostic criteria for forme fruste KC. However, none of our 4 patients diagnosed with forme fruste KC had simple astigmatism. In these patients, t...
Dear Editor
Chen et al. identified R1193Q, a single nucleotide polymorphism (SNP) in the cardiac sodium channel gene SCN5A, in a group of Han Chinese individuals. The frequency of SNP R1193Q in this Chinese population is high, reaching 12% (11/94) [1]. The results confirm our earlier report that SNP R1193Q is present in the general population [2]. SNP R1193Q occurs within the context of a CpG dimer. Because the major...
Pages