A patient with Wilms tumor and a new mutation in the REST gene
Astha Khiani, Julie Beasley, Matthew Timberlake, Mohamad M Al-Rahawan
Stoltze et al.1 described a nationwide germline study of children with Wilms Tumor. They highlight patients that harbored pathogenic germline variants in WT risk genes including FBXW7, WT1 and REST. The majority of the females with WT in their cohort had an underlying (epi)genetic condition. There was one patient who had a family history of WT along with a mutation in the REST gene (patient #1). The study found more than 100 variants of unknown significance and 13 in genes from 10 patients previously linked to WT predisposition, including a c.422C>G mutation in the REST gene (patient #24). Germline alterations in REST are associated with an increased risk of distinct tumor types/cancer risk along with other possible phenotypic presentations 1 . Another germline study found that 8% of WT patients had an identifiable pathogenic variant in a cancer predisposing gene and an even higher percentage (30%) for cases with family history 4.
We report a toddler with a personal and family history of WT. She harbors a variant in the REST gene that has not yet been documented in literature.
Our patient, 4-year-old female, was delivered at 35 weeks of gestation weighting 2,551 grams (50th percentile for gestational age). She had urogenital anomalies and neurodevelopmental disorders. SNP-Microarray identified a 17q12 deletion...
A patient with Wilms tumor and a new mutation in the REST gene
Astha Khiani, Julie Beasley, Matthew Timberlake, Mohamad M Al-Rahawan
Stoltze et al.1 described a nationwide germline study of children with Wilms Tumor. They highlight patients that harbored pathogenic germline variants in WT risk genes including FBXW7, WT1 and REST. The majority of the females with WT in their cohort had an underlying (epi)genetic condition. There was one patient who had a family history of WT along with a mutation in the REST gene (patient #1). The study found more than 100 variants of unknown significance and 13 in genes from 10 patients previously linked to WT predisposition, including a c.422C>G mutation in the REST gene (patient #24). Germline alterations in REST are associated with an increased risk of distinct tumor types/cancer risk along with other possible phenotypic presentations 1 . Another germline study found that 8% of WT patients had an identifiable pathogenic variant in a cancer predisposing gene and an even higher percentage (30%) for cases with family history 4.
We report a toddler with a personal and family history of WT. She harbors a variant in the REST gene that has not yet been documented in literature.
Our patient, 4-year-old female, was delivered at 35 weeks of gestation weighting 2,551 grams (50th percentile for gestational age). She had urogenital anomalies and neurodevelopmental disorders. SNP-Microarray identified a 17q12 deletion, which is linked to urogenital anomalies but has not yet been linked to WT 5. Her urogenital anomalies included echogenic kidneys and recto-vaginal fistula. No abnormalities were found in her uterus or ovaries. She also had hypotonia, developmental delay, frontal bossing, ventriculomegaly, pulmonary valve stenosis and transient small ASD. Additionally, her genetic workup revealed a 3p14.3 deletion. This has been linked to maturity onset diabetes but not WT.
At 16 months of age, a surveillance renal ultrasound identified right renal mass along with continued echogenicity in both kidneys. Additional imaging confirmed the 2.6x2.7x3 cm mid pole renal mass without metastatic disease. Nephron sparing surgery could not prevent right nephrectomy. Pathology confirmed balstema predominant, favorable histology WT. Perilobar nephrogenic rests and cortical glomerular cysts were noted in the benign kidney parenchyma. Paternal uncle and grandfather developed kidney tumors in childhood.
She tolerated chemotherapy as per AREN0534 regimen EE4A but had significant coinciding elevation in alkaline phosphatase. Pathology findings and urogenital phenotype warranted evaluation for predisposition to WT. The results only revealed c.1114G>C in the REST gene. This was classified as a variant of uncertain significance. The available algorithms (SIFT, PolyPhen-2, Align-GVGD) suggest this variant to be disruptive, but these predictions have not been confirmed by published functional studies.
Our patient is a female and Stoltze et al concluded that most female patients had predisposition to WT. The single patient they reported to have family history of WT had REST mutation. While our patient has a variant of unknown significance, her family history and her REST mutation increases the likelihood of her REST mutation being pathogenic. Nephrogenic rests in the normal kidney and echogenicity in the other kidney further this assumption. If pathogenic, this mutation is likely autosomal dominant given the family history. The presence of two additional mutations in this patient raises the question of the role of epigenetics in WT predisposition.
While testing for WT predisposition in family members affected by renal tumors during childhood was not feasible in our case, we will attempt to complete whole exome sequencing on this patient. Further research in this area is warranted.
References
1. Stoltze UK, Hildonen M, Hansen TVO, Foss-Skiftesvik J, Byrjalsen A, Lundsgaard M, Pignata L, Grønskov K, Tumer AZ, Schmiegelow K, Brok JS, Wadt KAW. Germline (epi)genetics reveals high predisposition in females: a 5-year, nationwide, prospective Wilms tumour cohort. J Med Genet. 2023 Apr 5:jmg-2022-108982. doi: 10.1136/jmg-2022-108982. Epub ahead of print. PMID: 37019617.
2. Leslie SW, Sajjad H, Murphy PB. Wilms Tumor. [Updated 2023 Mar 11]. In: StatPearls [Internet]. Treasure Island (FL): StatPearls Publishing; 2023 Jan-. Available from: https://www.ncbi.nlm.nih.gov/books/NBK442004/
3. Mahamdallie SS, Hanks S, Karlin KL, Zachariou A, Perdeaux ER, Ruark E, Shaw CA, Renwick A, Ramsay E, Yost S, Elliott A, Birch J, Capra M, Gray J, Hale J, Kingston J, Levitt G, McLean T, Sheridan E, Renwick A, Seal S, Stiller C, Sebire N, Westbrook TF, Rahman N. Mutations in the transcriptional repressor REST predispose to Wilms tumor. Nat Genet. 2015 Dec;47(12):1471-4. doi: 10.1038/ng.3440. Epub 2015 Nov 9. Erratum in: Nat Genet. 2016 Apr;48(4):473. PMID: 26551668.
4. Mahamdallie S, Yost S, Poyastro-Pearson E, Holt E, Zachariou A, Seal S, Elliott A, Clarke M, Warren-Perry M, Hanks S, Anderson J, Bomken S, Cole T, Farah R, Furtwaengler R, Glaser A, Grundy R, Hayden J, Lowis S, Millot F, Nicholson J, Ronghe M, Skeen J, Williams D, Yeomanson D, Ruark E, Rahman N. Identification of new Wilms tumour predisposition genes: an exome sequencing study. Lancet Child Adolesc Health. 2019 May;3(5):322-331. doi: 10.1016/S2352-4642(19)30018-5. Epub 2019 Mar 16. PMID: 30885698; PMCID: PMC6472290.
5. Rasmussen M, Vestergaard EM, Graakjaer J, Petkov Y, Bache I, Fagerberg C, Kibaek M, Svaneby D, Petersen OB, Brasch-Andersen C, Sunde L. 17q12 deletion and duplication syndrome in Denmark-A clinical cohort of 38 patients and review of the literature. Am J Med Genet A. 2016 Nov;170(11):2934-2942. doi: 10.1002/ajmg.a.37848. Epub 2016 Jul 13. PMID: 27409573.
To Angela E. Lin, medical geneticist, Mass General for Children (Massachusetts General Hospital. Thank you for your interest in our publication.
We agree, as we mention as part of our conclusion, that surveillance regarding aorthopathy in JP-HHT is important. Danish patients with JP-HHT are systematically recommended cardiovascular assessment, including echocardiogram, in addition to HHT-and GI-surveillance.
We applaud the Danish registry's wonderful contribution to the field of SMAD4-HHT research. We would like to alert readers to our recent review of 19 individuals (one new) about the connective tissue features, and severe aortic and valvar disease (Gheewalla et al., 2022). In addition, we called attention to the opposing phenotypes of SMAD4-HHT and SMAD4-Myhre syndrome as a result of loss-of-function and gain-of-function pathogenic variants, respectively. The nearly simultaneous publication of our paper would have prevented inclusion in this current article.
REFERENCE: Gheewalla, G. M., Luther, J., Das, S., Kreher, J. B., Scimone, E. R., Wong, A. W., Lindsay, M. E., & Lin, A. E. (2022). An additional patient with SMAD4-Juvenile Polyposis-Hereditary hemorrhagic telangiectasia and connective tissue abnormalities: SMAD4 loss-of-function and gain-of-function pathogenic variants result in contrasting phenotypes. American journal of medical genetics. Part A, 10.1002/ajmg.a.62915. Advance online publication. https://doi.org/10.1002/ajmg.a.62915
Constitutional pathogenic variants in TP53 are associated with a significant paediatric tumour risk with up to 41% of affected people developing their first tumour by the age of 18 [1]. Recently published UK Clinical Genetics Group Guidelines recommend childhood surveillance for carriers of TP53 pathogenic variants including annual whole-body and brain MRI, 3-4 monthly abdominal ultrasound and review in a dedicated clinic [2]. Such surveillance has been ongoing at Great Ormond Street Hospital (GOSH) for over three years. Through seeking parental views, we demonstrated that the surveillance is generally acceptable for children and their families, with high levels of expressed satisfaction.
It has long been recognised that hospital procedures may present a source of anxiety and psychological distress for children and their families [3]. Recent work by SIGNIFY reported in this journal has demonstrated that adult carriers of TP53 pathogenic variants generally experienced low levels of psychological morbidity around whole-body MRI and found it to be an acceptable intervention [4]. However, comparable data around children’s experiences did not exist. We were keen to understand more about children's and parents’ experience of this surveillance clinic, including any associated burden.
24 families representing a total of 41 children under the care of the TP53 carrier clinic at GOSH were invited by telephone to take part in a semi-structured anonymous online sur...
Constitutional pathogenic variants in TP53 are associated with a significant paediatric tumour risk with up to 41% of affected people developing their first tumour by the age of 18 [1]. Recently published UK Clinical Genetics Group Guidelines recommend childhood surveillance for carriers of TP53 pathogenic variants including annual whole-body and brain MRI, 3-4 monthly abdominal ultrasound and review in a dedicated clinic [2]. Such surveillance has been ongoing at Great Ormond Street Hospital (GOSH) for over three years. Through seeking parental views, we demonstrated that the surveillance is generally acceptable for children and their families, with high levels of expressed satisfaction.
It has long been recognised that hospital procedures may present a source of anxiety and psychological distress for children and their families [3]. Recent work by SIGNIFY reported in this journal has demonstrated that adult carriers of TP53 pathogenic variants generally experienced low levels of psychological morbidity around whole-body MRI and found it to be an acceptable intervention [4]. However, comparable data around children’s experiences did not exist. We were keen to understand more about children's and parents’ experience of this surveillance clinic, including any associated burden.
24 families representing a total of 41 children under the care of the TP53 carrier clinic at GOSH were invited by telephone to take part in a semi-structured anonymous online survey. The survey started with demographic questions and continued to questions about the levels of anxiety, optimism and satisfaction associated with clinic visits, scans, and being part of the surveillance clinic overall. Each question started with a structured format but also invited free-text comments.
All families agreed to receive the survey and 16/24 families completed it. Of these, six had children affected with a tumour, all of which were identified prior to starting the surveillance programme. 13 respondents had wider familial experience of tumours, including ten with an affected parent.
A majority of the respondents (eleven) had been part of the clinic for at least one year.
Overall, parents reported a very high degree of satisfaction associated with being part of the surveillance clinic. One respondent had not yet had an MRI and one had not yet had any surveillance.
Of those whose children had started surveillance scans, 14/15 parents (93%) reported being satisfied or very satisfied with the clinic visits, the ultrasound scans and the service as a whole. Levels of satisfaction with the MRI scans were comparable, with 13/14 respondents (93%) reporting being satisfied or very satisfied.
Half of parents reported higher levels of optimism about their child’s diagnosis since being invited to join the surveillance clinic. Of those whose child had started surveillance scans, just 3/15 (20%) felt anxious or very anxious about attending. Comments by parents suggested that this was associated with waiting for results, and that it was preferable to the alternative of no surveillance:
‘[I feel] anxiety when waiting for results.’
‘[I feel anxious about] not knowing what could be detected.’
‘The alternative of no clinic/surveillance is a million times worse.’
Only 2/15 children were felt by their parents to be anxious or very anxious about attending. Parents expressed that their children were comforted by the atmosphere in the hospital:
‘[S]he enjoys visiting the hospital as it is set up to make children feel at ease.’
Others expressed that their children were too young to understand the implications.
All parents expressed that they felt the surveillance was valuable and that they had a good understanding of its aims. Some mentioned that they were aware the surveillance may not improve outcome but they felt supported by being part of the clinic and ‘having somewhere to turn.’
‘I understand that it may not impact long-term outcomes but it is hugely beneficial mentally compared to the alternative of being left completely on your own.’
‘[I value the] ability to access top class care at short notice in the event of issues’
‘[Being part of the clinic is] incredibly powerful in terms of coping with the continual mental challenge of being a family with LFS and numerous early-deceased relatives. It is vital to have this help in order to cope.’
‘[The team …] are there should I need them’
However, some families’ distance from the hospital meant that they did not feel GOSH would be a practical primary contact point in case of problems.
‘The ability to contact the team isn’t all that important [for us] because of the distance, GOSH is about 250 miles away so wouldn’t be our first port of call’
With respect to the issue of childhood testing in the context of surveillance, 3/16 respondents said they would not have chosen for their child to have testing, had surveillance not been available. One parent commented that the existence of the surveillance programme had influenced her decision to conceive naturally.
Parents’ experiences of the disease in the family appeared to influence their beliefs about the value of surveillance; there was a theme of concern about what would happen when children aged out of the programme, and ‘what if’ reflections about whether relatives’ outcomes might have been different, had this surveillance been available to them.
‘LFS is terrifying. You feel alone. Adult surveillance is non-existent and alarming in the UK.’
‘[Surveillance] may have helped in other cases.’
‘This is incredibly powerful in terms of coping with the continual mental challenge of being a family with LFS and numerous early-deceased relatives. It is vital to have this help in order to cope. I am deeply alarmed about what happens at age 18 though. Suddenly there will be zero help in the UK...this is our experience as family with adults who have LFS.’
In summary, our work shows that the degree of burden associated with the TP53 surveillance programme is acceptable for children and families and that there appears to be a significant psychological benefit. It is likely that shared-care or local surveillance will be helpful for patients travelling long distances to access this service.
Further work will clarify the longer term impact, aided by the new UK CGG Guidelines.
References
1. Bougeard G, Renaux-Petel M, Flaman JM, et al. Revisiting Li-Fraumeni Syndrome From TP53 Mutation Carriers. J Clin Oncol. 2015;33(21):2345-2352. doi:10.1200/JCO.2014.59.5728
2. Hanson H, Brady AF, Crawford G Consensus Group Members, et al UKCGG Consensus Group guidelines for the management of patients with constitutional TP53 pathogenic variants J Med Genet 2021;58:135-139.
3. Bachanas P J, Roberts MC. Factors affecting children's attitudes toward health care and responses to stressful medical procedures, J Ped Psychol, 1995, vol. 20 (pg. 261-275)
4. Bancroft EK, Saya S, Brown E, et al. Psychosocial effects of whole-body MRI screening in adult high-risk pathogenic TP53 mutation carriers: a case-controlled study (SIGNIFY). J Med Genet 2020;57:226-236.
We appreciate the article by Chirita-Emandi at al (1).
The authors showed the phenotype of nine patients with biallelic variants at BRCA1 gene associated with Fanconi anemia-like complementation group-S (MIM 617883). As it is a rare syndrome, the publication of articles describing the clinical characteristics and follow-up data are important to improve the knowledge and disseminate evidence-based information.
In Chirita-Emandi’s article, one patient is first reported and eight are from previous studies. All patients had prenatal and postnatal growth failure, microcephaly, skin pigmentation lesions, facial dysmorphism and cancer family history. Eight presented mild developmental delay, and six had cancer. None presented bone marrow failure or immunodeficiency (1).
In this letter, we would like to update the clinical case of one of these patients. In a previous article we reported a homozygous loss-of-function BRCA1 mutation in a 2.5-year-old girl with severe short stature, microcephaly, neurodevelopmental delay, congenital heart disease and dysmorphic features (2). At 6 years-old, she evaluated with neurological symptoms and her skull tomography detected an expansive and infiltrative lesion in the encephalic trunk, compressing and displacing the IV ventricle and obliterating the prepontine cistern and the cerebellar angles. The lesion characteristics were suggestive of diffuse astrocytoma. Soon after a decompressive neurological surgery, this child died....
We appreciate the article by Chirita-Emandi at al (1).
The authors showed the phenotype of nine patients with biallelic variants at BRCA1 gene associated with Fanconi anemia-like complementation group-S (MIM 617883). As it is a rare syndrome, the publication of articles describing the clinical characteristics and follow-up data are important to improve the knowledge and disseminate evidence-based information.
In Chirita-Emandi’s article, one patient is first reported and eight are from previous studies. All patients had prenatal and postnatal growth failure, microcephaly, skin pigmentation lesions, facial dysmorphism and cancer family history. Eight presented mild developmental delay, and six had cancer. None presented bone marrow failure or immunodeficiency (1).
In this letter, we would like to update the clinical case of one of these patients. In a previous article we reported a homozygous loss-of-function BRCA1 mutation in a 2.5-year-old girl with severe short stature, microcephaly, neurodevelopmental delay, congenital heart disease and dysmorphic features (2). At 6 years-old, she evaluated with neurological symptoms and her skull tomography detected an expansive and infiltrative lesion in the encephalic trunk, compressing and displacing the IV ventricle and obliterating the prepontine cistern and the cerebellar angles. The lesion characteristics were suggestive of diffuse astrocytoma. Soon after a decompressive neurological surgery, this child died.
Due to its rarity, we still do not have sufficient data to provide accurate medical management and guidelines protocols related to patients with biallelic BRCA1 variants. However, taking together, seven in eight patients had cancer up to 30 years-old and two of them had solid tumors other than breast or ovarian cancer, indicating the necessity of a closely follow-up and actively searching for malignancy. Nonetheless, further studies and international collaboration are fundamental to understanding the natural history of this disease and to propose appropriate medical recommendations.
References:
1. Chirita-Emandi A, Andreescu N, Popa C, Mihailescu A, Riza AL, Plesea R, et al. Biallelic variants in BRCA1 gene cause a recognizable phenotype within chromosomal instability syndromes reframed as BRCA1 deficiency. J Med Genet. 2020.
2. Freire BL, Homma TK, Funari MFA, Lerario AM, Leal AM, Velloso EDRP, et al. Homozygous loss of function BRCA1 variant causing a Fanconi-anemia-like phenotype, a clinical report and review of previous patients. Eur J Med Genet. 2018;61(3):130-3.
Evidence for a mitochondrial disease phenotype due to APOO deletion.
Kumarie Latchman1*, Antoni Barrientos 2*
1. Department of Human Genetics, University of Miami Miller School of Medicine, Miami, FL, United States
2. Department of Neurology, University of Miami Miller School of Medicine, Miami, FL, United States.
*Corresponding authors
The APOO (Apolipoprotein O) gene codes for MIC26, a subunit of the MICOS complex (mitochondrial contact site and cristae organizing system). APOO was recently reported as a novel mitochondrial disease locus upon identification of a loss-of-function missense variant, c. 350T>C , (p.I117T in MIC26 ) in a hemizygous male proband with mitochondrial myopathy, lactic acidosis, cognitive impairment, and autistic features. 1
Here, we present a six-year-old African American male with a history of epilepsy, developmental delay, hypotonia, coordination and balance difficulties, cognitive impairment, autism disorder, and microcytic anemia. Birth history was unremarkable, and he walked at 24 months despite coordination and balance deficits. His vocabulary is less than ten words at six years old, and he does not recognize body parts, letters, or numbers. Laboratory findings include normal lactic acid, 1.8 (0.4-1.8 mmol/L), and creatine kinase 126 U/L (<160 U/L). Brain magnetic resonance image was unremarkable. Family history is positive for schizophrenia and intellectual disability in his mother and psychi...
Evidence for a mitochondrial disease phenotype due to APOO deletion.
Kumarie Latchman1*, Antoni Barrientos 2*
1. Department of Human Genetics, University of Miami Miller School of Medicine, Miami, FL, United States
2. Department of Neurology, University of Miami Miller School of Medicine, Miami, FL, United States.
*Corresponding authors
The APOO (Apolipoprotein O) gene codes for MIC26, a subunit of the MICOS complex (mitochondrial contact site and cristae organizing system). APOO was recently reported as a novel mitochondrial disease locus upon identification of a loss-of-function missense variant, c. 350T>C , (p.I117T in MIC26 ) in a hemizygous male proband with mitochondrial myopathy, lactic acidosis, cognitive impairment, and autistic features. 1
Here, we present a six-year-old African American male with a history of epilepsy, developmental delay, hypotonia, coordination and balance difficulties, cognitive impairment, autism disorder, and microcytic anemia. Birth history was unremarkable, and he walked at 24 months despite coordination and balance deficits. His vocabulary is less than ten words at six years old, and he does not recognize body parts, letters, or numbers. Laboratory findings include normal lactic acid, 1.8 (0.4-1.8 mmol/L), and creatine kinase 126 U/L (<160 U/L). Brain magnetic resonance image was unremarkable. Family history is positive for schizophrenia and intellectual disability in his mother and psychiatric and seizure disorders in two previous maternal generations.
Whole-exome sequencing with copy number variant analysis revealed a ~275kb-deletion on Xp22.11, arr [GRCh37] Xp22.11(23731277_24006696)x0, which includes five annotated genes: exon 4 of KLHL15, ACOT9 (no associated conditions), and, in agreement with DNA microarray analysis, the entire genes APOO, SAT1 (associated with keratosis follicularis spinulosa decalvans), and CXorf58 (no associated conditions).
The phenotype of this patient is consistent with a mitochondrial disease due to a complete APOO gene deletion. Like the previously reported APOO case 1, our patient presented with muscle weakness -hypotonia and poor coordination-, cognitive impairment, and an autism spectrum disorder. Differently, our patient presents with epilepsy, which could result from the KLHL15 exon 4 deletion. 2-3 Functional studies are needed to determine how the absence of MIC26 impacts the MICOS complex integrity and function and overall mitochondrial physiology.
Acknowlegements
We thank the family for allowing us to report this case.
Research in the Barrientos laboratory is supported by National Institutes of Health grant R35-GM118141
Correspondence: Kumarie Latchman, kxl604@med.miami.edu, and Antoni Barrientos, ABarrientos@med.miami.edu
Conflict of interest: None declared.
REFERENCES
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3. Mignon-Ravix C, Cacciagli P, Choucair N, Popovici C, Missirian C, Milh M, Mégarbané A, Busa T, Julia S, Girard N, Badens C, Sigaudy S, Philip N, Villard L. Intragenic rearrangements in X-linked intellectual deficiency: results of a-CGH in a series of 54 patients and identification of TRPC5 and KLHL15 as potential XLID genes. Am J Med Genet A 2014; 164A:1991-7.
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of
hypoparathyroidism, sensorineural deafness and renal dysplasia has been
recognized as a distinct clinical entity since the report by Bilous et al.
in 1992. In fact, this syndrome was described for the first time in 1977
by Barakat et al. [2]. The syndrome with presumed autosomal rec...
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of
hypoparathyroidism, sensorineural deafness and renal dysplasia has been
recognized as a distinct clinical entity since the report by Bilous et al.
in 1992. In fact, this syndrome was described for the first time in 1977
by Barakat et al. [2]. The syndrome with presumed autosomal recessive
inheritance was later named the “Barakat syndrome” [3-5]. In 1992 Bilous
et al. [6] described a phenotypically similar syndrome in one family with
autosomal dominant inheritance. The mode of inheritance may not be a
fundamental difference, and the disorder in the two families described by
Barakat and Bilous may be due to different mutations in the same
gene [7]. Inheritance in the family described by Barakat et al. could also be
autosomal dominant with reduced penetrance [7]. In 1997 Hasegawa et al. [8]
described a Japanese girl with this syndrome and a de novo deletion of
10p13. They suggested the name “HDR syndrome”. Subsequently, a few more
patients were reported.
Other synonyms for Barakat syndrome include
“Hypoparathyroidism, sensorineural deafness and renal dysplasia”, “HDR
syndrome”, and “Nephrosis, nerve deafness and hypoparathyroidism” [7]. The
syndrome should then consist of hypoparathyroidism, sensorineural deafness
and renal disease, since various renal abnormalities have been described
including nephrotic syndrome, renal dysplasia, hypoplasia and unilateral
renal agenesis, vesicoureteral reflux, pelvicalyceal deformity,
hydronephrosis, and chronic renal failure.
First described by Barakat et al. in 1977, Barakat syndrome is a rare
condition consisting of hypoparathyroidism, sensorineural deafness and
renal disease. The defect is on chromosome 10p15,10p15.1-p14, with
haploinsufficiency or mutation of the GATA3 gene being the underlying cause of the syndrome [7,9].
References
1. Muroya, K, Hasegawa,T, Ito,Y, Nagai,T. Isotani,H, Iwata,Y,
Yamamoto,K, Fujimoto,S, Seishu,S, Fukushima,Y, Hasegawa,Y, Ogata,T. GATA3
abnormalities and the phenotypic spectrum of HDR syndrome. J Med Genet
2001;38:374-80.
2. Barakat, AY, D'Albora, JB, Martin, MM, Jose, PA. Familial
nephrosis, nerve deafness, and hypoparathyroidism. J. Pediat 1977; 91: 61-
4.
3. McKusick V. Mendalian Inheritance in Man, 12th Edition, Volume 2,
Baltimore,The Johns Hopkins University Press, l998.
4. Magnalini SI, et al: Dictionary of Medical Syndromes, 4th
edition,Philadelphia, J.B. Lippencott-Raven, 1997, p 73.
5. Rimoin DL, Connor, JM, Pyeritz RE, Korf BR. Emery and Rimoin’s
Principles and Practice of Medical Genetics. Fourth Edition, Volume 2,
London, Churchill Livingstone, 2002, p2217.
6. Bilous, RW, Murty, G, Parkinson, DB, Thakker, RV, Coulthard, MG,
Burn, J, Mathias, D, Kendall-Taylor, P. Btief report: Autosomal dominant
familial hypoparathyroidism, sensorineural deafness, and renal dysplasia.
New Eng J Med 1992; 327: 1069-74.
7. Online Mendelian Inheritance in Man, Johns Hopkins University
#146255.
8. Hasegawa,T, Hasegawa, Y, Aso, T.; Koto, S, Nagai, T, Tsuchiya, Y,
Kim, K, Ohashi, H, Wakui, K, Fukushima, Y. HDR syndrome
(hypoparathyroidism, sensorineural deafness, renal dysplasia) associated
with del(10)(p13). Am J Med Genet 1997; 73: 416-8.
9. Van Esch, H, Groenen, P, Nesbit, MA, Schuffenhauer, S, Lichtner,
P, Vanderlinden, G, Harding, B, Beetz, R, Bilous, RW, Holdaway, I, Shaw,
NJ, Fryns, J.-P, Van de Ven, W, Thakker, RV, Devriendt, K. GATA3 haplo-
insufficiency causes human HDR syndrome. Nature 2000; 406: 419-22.
Science has been defined as a process of progressive approximation to the truth, so-called “increasing verisimilitude” [1]. The letter of Professor Fischer is illustrative in this regard.
We previously described genetic analyses of a consanguineous Pakistani family diagnosed with “recessive progressive symmetric erythrokeratoderma” by multiple dermatologists. By autozygosity mapping and sequencing, we identified potentially pathogenic frameshift mutations in two genes located within a region of autozygosity on chr12q12-q14.1, SDR9C7 and KRT83, in perfect linkage disequilibrium in this family [2]. At that time we did not consider SDR9C7 a good candidate, and we concluded that the KRT83 frameshift was more likely to be causal.
Our study was carried out in the early autumn of 2015, we wrote our paper in the spring of 2016, a revised version was accepted for publication in autumn, 2016, and our paper was published online in late 2016. Presumably at the same time, Shigehara et al. [3] carried out parallel studies, unambiguously identifying SDR9C7 as the gene for recessive congenital lamellar ichthyosis based on three families with different mutations. Their findings were published at nearly the same time as ours, and were subsequently confirmed by other investigators [4-6]. Obviously, none of this was known at the time of our study.
With the 20:20 clarity of hindsight, it now seems clear that many of the clinical features in our study family are consisten...
Science has been defined as a process of progressive approximation to the truth, so-called “increasing verisimilitude” [1]. The letter of Professor Fischer is illustrative in this regard.
We previously described genetic analyses of a consanguineous Pakistani family diagnosed with “recessive progressive symmetric erythrokeratoderma” by multiple dermatologists. By autozygosity mapping and sequencing, we identified potentially pathogenic frameshift mutations in two genes located within a region of autozygosity on chr12q12-q14.1, SDR9C7 and KRT83, in perfect linkage disequilibrium in this family [2]. At that time we did not consider SDR9C7 a good candidate, and we concluded that the KRT83 frameshift was more likely to be causal.
Our study was carried out in the early autumn of 2015, we wrote our paper in the spring of 2016, a revised version was accepted for publication in autumn, 2016, and our paper was published online in late 2016. Presumably at the same time, Shigehara et al. [3] carried out parallel studies, unambiguously identifying SDR9C7 as the gene for recessive congenital lamellar ichthyosis based on three families with different mutations. Their findings were published at nearly the same time as ours, and were subsequently confirmed by other investigators [4-6]. Obviously, none of this was known at the time of our study.
With the 20:20 clarity of hindsight, it now seems clear that many of the clinical features in our study family are consistent with the diagnosis of congenital ichthyosis, resulting from the homozygous frameshift of SDR9C7. That places the true role of the KRT83 frameshift in this family into question. It is noteworthy that affected members of this family exhibit the additional clinical feature of striking erythrokeratoderma, not evident in affected members of the Pakistani family reported by Karim et al. [4] who carry the same SDR9C7 frameshift but not the frameshift in KRT83. Whether prominent erythrokeratoderma might be an atypical feature of congenital ichthyosis in this family, an epistatic effect of an unknown common unlinked variant in this population, whether that might reflect a specific effect of the additional homozygous KRT83 frameshift, or whether that might be a summary effect of the SDR9C7 and KRT83 frameshifts in perfect linkage disequilibrium in this family remains to be determined. Increasing verisimilitude indeed!
1. Niiniluoto I. Verisimilitude: the third period. Br J Phil Sci 1998;49:1–29.
2. Shah K, Ansar M, Mughal Z, Khan F, Ahmad W, Ferrara T, Spritz R. Recessive progressive symmetric erythrokeratoderma results from a homozygous loss-of-function mutation of KRT83 and is allelic with dominant monilethrix. J Med Genet 2017;54:186-9.
3. Shigehara Y, Okuda S, Nemer G, Chedraoui A, Hayashi R, Bitar F, Nakai H, Abbas O, Daou L, Abe R, Sleiman MB, Kibbi AG, Kurban M, Shimomura Y. Mutations in SDR9C7 gene encoding an enzyme for vitamin A metabolism underlie autosomal recessive congenital ichthyosis. Hum Mol Genet 2016;25:4484–93.
4. Karim N, Murtaza G, Naeem M. Whole‐exome sequencing identified a novel frameshift mutation in SDR9C7 underlying autosomal recessive congenital ichthyosis in a Pakistani family. Br J Dermatol 2017; 177: e191–2.
5. Takeichi T, Nomura T, Takama H, Kono M, Sugiura K, Watanabe D, Shimizu H, Simpson MA, McGrath JA, Akiyama M. Deficient stratum corneum intercellular lipid in a Japanese patient with lamellar ichthyosis by a homozygous deletion mutation in SDR9C7. Br J Dermatol 2017;177: e62–4.
6. Hotz A, Fagerberg C, Vahlquist A, Bygum A, Törmä H, Rauschendorf MA, Zhang H, Heinz L, Bourrat E, Hausser I, Vestergaard V, Dragomir A, Zimmer AD, Fischer J. Identification of mutations in SDR9C7 in six families with autosomal recessive congenital ichthyosis. Br J Dermatol 2018;178:e207-e209.
Fascinated to see the comments about irregular heartbeats as an x-linked ichthyosis suffer myself. If you are carrying out further studies I wonder if there is any trend for female carriers having the same. My mother an x-linked ichthyosis carrier has always had an extra hearth beat that causes problems for medical exams and operations. Could it be used as an additional test for expectant mums for potential x-linked babies. A great article and thanks - Jeremy Instone
Dear Mr Instone - Many thanks for your interest in our work and your comment! In our analyses we did look at ICD-10 diagnoses of atrial fibrillation/flutter, and self-reported heart problems in female carriers versus female non-carriers, but didn't see any difference in prevalence between the two groups (results in the Supplementary Data). However, as these are relatively crude measures, we cannot the exclude the possibility that there are actually higher rates of subtle cardiac dysfunction in female carriers relative to non-carriers, and further, more focussed studies might look at this. Regards, Dr William Davies
A patient with Wilms tumor and a new mutation in the REST gene
Astha Khiani, Julie Beasley, Matthew Timberlake, Mohamad M Al-Rahawan
Stoltze et al.1 described a nationwide germline study of children with Wilms Tumor. They highlight patients that harbored pathogenic germline variants in WT risk genes including FBXW7, WT1 and REST. The majority of the females with WT in their cohort had an underlying (epi)genetic condition. There was one patient who had a family history of WT along with a mutation in the REST gene (patient #1). The study found more than 100 variants of unknown significance and 13 in genes from 10 patients previously linked to WT predisposition, including a c.422C>G mutation in the REST gene (patient #24). Germline alterations in REST are associated with an increased risk of distinct tumor types/cancer risk along with other possible phenotypic presentations 1 . Another germline study found that 8% of WT patients had an identifiable pathogenic variant in a cancer predisposing gene and an even higher percentage (30%) for cases with family history 4.
We report a toddler with a personal and family history of WT. She harbors a variant in the REST gene that has not yet been documented in literature.
Our patient, 4-year-old female, was delivered at 35 weeks of gestation weighting 2,551 grams (50th percentile for gestational age). She had urogenital anomalies and neurodevelopmental disorders. SNP-Microarray identified a 17q12 deletion...
Show MoreTo Angela E. Lin, medical geneticist, Mass General for Children (Massachusetts General Hospital. Thank you for your interest in our publication.
We agree, as we mention as part of our conclusion, that surveillance regarding aorthopathy in JP-HHT is important. Danish patients with JP-HHT are systematically recommended cardiovascular assessment, including echocardiogram, in addition to HHT-and GI-surveillance.
We applaud the Danish registry's wonderful contribution to the field of SMAD4-HHT research. We would like to alert readers to our recent review of 19 individuals (one new) about the connective tissue features, and severe aortic and valvar disease (Gheewalla et al., 2022). In addition, we called attention to the opposing phenotypes of SMAD4-HHT and SMAD4-Myhre syndrome as a result of loss-of-function and gain-of-function pathogenic variants, respectively. The nearly simultaneous publication of our paper would have prevented inclusion in this current article.
REFERENCE: Gheewalla, G. M., Luther, J., Das, S., Kreher, J. B., Scimone, E. R., Wong, A. W., Lindsay, M. E., & Lin, A. E. (2022). An additional patient with SMAD4-Juvenile Polyposis-Hereditary hemorrhagic telangiectasia and connective tissue abnormalities: SMAD4 loss-of-function and gain-of-function pathogenic variants result in contrasting phenotypes. American journal of medical genetics. Part A, 10.1002/ajmg.a.62915. Advance online publication. https://doi.org/10.1002/ajmg.a.62915
Constitutional pathogenic variants in TP53 are associated with a significant paediatric tumour risk with up to 41% of affected people developing their first tumour by the age of 18 [1]. Recently published UK Clinical Genetics Group Guidelines recommend childhood surveillance for carriers of TP53 pathogenic variants including annual whole-body and brain MRI, 3-4 monthly abdominal ultrasound and review in a dedicated clinic [2]. Such surveillance has been ongoing at Great Ormond Street Hospital (GOSH) for over three years. Through seeking parental views, we demonstrated that the surveillance is generally acceptable for children and their families, with high levels of expressed satisfaction.
It has long been recognised that hospital procedures may present a source of anxiety and psychological distress for children and their families [3]. Recent work by SIGNIFY reported in this journal has demonstrated that adult carriers of TP53 pathogenic variants generally experienced low levels of psychological morbidity around whole-body MRI and found it to be an acceptable intervention [4]. However, comparable data around children’s experiences did not exist. We were keen to understand more about children's and parents’ experience of this surveillance clinic, including any associated burden.
24 families representing a total of 41 children under the care of the TP53 carrier clinic at GOSH were invited by telephone to take part in a semi-structured anonymous online sur...
Show MoreWe appreciate the article by Chirita-Emandi at al (1).
Show MoreThe authors showed the phenotype of nine patients with biallelic variants at BRCA1 gene associated with Fanconi anemia-like complementation group-S (MIM 617883). As it is a rare syndrome, the publication of articles describing the clinical characteristics and follow-up data are important to improve the knowledge and disseminate evidence-based information.
In Chirita-Emandi’s article, one patient is first reported and eight are from previous studies. All patients had prenatal and postnatal growth failure, microcephaly, skin pigmentation lesions, facial dysmorphism and cancer family history. Eight presented mild developmental delay, and six had cancer. None presented bone marrow failure or immunodeficiency (1).
In this letter, we would like to update the clinical case of one of these patients. In a previous article we reported a homozygous loss-of-function BRCA1 mutation in a 2.5-year-old girl with severe short stature, microcephaly, neurodevelopmental delay, congenital heart disease and dysmorphic features (2). At 6 years-old, she evaluated with neurological symptoms and her skull tomography detected an expansive and infiltrative lesion in the encephalic trunk, compressing and displacing the IV ventricle and obliterating the prepontine cistern and the cerebellar angles. The lesion characteristics were suggestive of diffuse astrocytoma. Soon after a decompressive neurological surgery, this child died....
Evidence for a mitochondrial disease phenotype due to APOO deletion.
Kumarie Latchman1*, Antoni Barrientos 2*
1. Department of Human Genetics, University of Miami Miller School of Medicine, Miami, FL, United States
2. Department of Neurology, University of Miami Miller School of Medicine, Miami, FL, United States.
*Corresponding authors
The APOO (Apolipoprotein O) gene codes for MIC26, a subunit of the MICOS complex (mitochondrial contact site and cristae organizing system). APOO was recently reported as a novel mitochondrial disease locus upon identification of a loss-of-function missense variant, c. 350T>C , (p.I117T in MIC26 ) in a hemizygous male proband with mitochondrial myopathy, lactic acidosis, cognitive impairment, and autistic features. 1
Show MoreHere, we present a six-year-old African American male with a history of epilepsy, developmental delay, hypotonia, coordination and balance difficulties, cognitive impairment, autism disorder, and microcytic anemia. Birth history was unremarkable, and he walked at 24 months despite coordination and balance deficits. His vocabulary is less than ten words at six years old, and he does not recognize body parts, letters, or numbers. Laboratory findings include normal lactic acid, 1.8 (0.4-1.8 mmol/L), and creatine kinase 126 U/L (<160 U/L). Brain magnetic resonance image was unremarkable. Family history is positive for schizophrenia and intellectual disability in his mother and psychi...
Dear Editor,
I read with interest the article by Muroya et al. [1].
The authors mention that the inherited condition of hypoparathyroidism, sensorineural deafness and renal dysplasia has been recognized as a distinct clinical entity since the report by Bilous et al. in 1992. In fact, this syndrome was described for the first time in 1977 by Barakat et al. [2]. The syndrome with presumed autosomal rec...
Science has been defined as a process of progressive approximation to the truth, so-called “increasing verisimilitude” [1]. The letter of Professor Fischer is illustrative in this regard.
We previously described genetic analyses of a consanguineous Pakistani family diagnosed with “recessive progressive symmetric erythrokeratoderma” by multiple dermatologists. By autozygosity mapping and sequencing, we identified potentially pathogenic frameshift mutations in two genes located within a region of autozygosity on chr12q12-q14.1, SDR9C7 and KRT83, in perfect linkage disequilibrium in this family [2]. At that time we did not consider SDR9C7 a good candidate, and we concluded that the KRT83 frameshift was more likely to be causal.
Our study was carried out in the early autumn of 2015, we wrote our paper in the spring of 2016, a revised version was accepted for publication in autumn, 2016, and our paper was published online in late 2016. Presumably at the same time, Shigehara et al. [3] carried out parallel studies, unambiguously identifying SDR9C7 as the gene for recessive congenital lamellar ichthyosis based on three families with different mutations. Their findings were published at nearly the same time as ours, and were subsequently confirmed by other investigators [4-6]. Obviously, none of this was known at the time of our study.
With the 20:20 clarity of hindsight, it now seems clear that many of the clinical features in our study family are consisten...
Show MoreFascinated to see the comments about irregular heartbeats as an x-linked ichthyosis suffer myself. If you are carrying out further studies I wonder if there is any trend for female carriers having the same. My mother an x-linked ichthyosis carrier has always had an extra hearth beat that causes problems for medical exams and operations. Could it be used as an additional test for expectant mums for potential x-linked babies. A great article and thanks - Jeremy Instone
Dear Mr Instone - Many thanks for your interest in our work and your comment! In our analyses we did look at ICD-10 diagnoses of atrial fibrillation/flutter, and self-reported heart problems in female carriers versus female non-carriers, but didn't see any difference in prevalence between the two groups (results in the Supplementary Data). However, as these are relatively crude measures, we cannot the exclude the possibility that there are actually higher rates of subtle cardiac dysfunction in female carriers relative to non-carriers, and further, more focussed studies might look at this. Regards, Dr William Davies
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