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Use of a set of highly polymorphic minisatellite probes for the identification of cryptic 1p36.3 deletions in a large collection of patients with idiopathic mental retardation
  1. FABIENNE GIRAUDEAU*,
  2. LAURENCE TAINE,
  3. VALÉRIE BIANCALANA,
  4. BRUNO DELOBEL§,
  5. HUBERT JOURNEL,
  6. CHANTAL MISSIRIAN**,
  7. DIDIER LACOMBE,
  8. DOMINIQUE BONNEAU164,
  9. PHILIPPE PARENT,
  10. DOMINIQUE AUBERT§§,
  11. YOLANDE HAUCK*,
  12. MARIE FRANÇOISE CROQUETTE§,
  13. ANNICK TOUTAIN¶¶,
  14. MARIE GENEVIÈVE MATTEI**,
  15. HERVÉ AVET LOISEAU§§,
  16. ALBERT DAVID165,
  17. GILLES VERGNAUD*,170
  1. *IECH, Institut de Génétique et Microbiologie, Université Paris Sud, 91405 Orsay Cedex, France
  2. †Service de Génétique, CHU Pellegrin, Place Amélie Raba Léon, 33076 Bordeaux Cedex, France
  3. ‡INSERM U184-CNRS-LGME, Faculté de Médecine, Institut de Chimie Biologique, 11 rue Humann, 67085 Strasbourg Cedex, France
  4. §Laboratoire de Cytogénétique, Hôpital St Antoine, 329 Boulevard Victor Hugo, BP 225, 59019 Lille Cedex, France
  5. ¶Centre Hospitalier Chubert de Vannes, Boulevard du Général Guillaudot, 56017 Vannes Cedex, France
  6. **INSERM U419, Faculté de Médecine, Boulevard Jean Moulin, 13385 Marseille, France
  7. 164Hôpital Jean Bernard, BP 577, 86021 Poitiers, France
  8. ‡Consultation de Génétique-Pédiatrie, Centre Hospitalier Régional A Morvan, BP 824, 29285 Brest Cedex, France
  9. §§Institut de Biologie des Hôpitaux de Nantes, 9 quai Moncousu, 44035 Nantes Cedex, France
  10. ¶¶Service de Génétique, Hôpital Bretonneau, 2 Boulevard Tonnellé, 37044 Tours Cedex, France
  11. 165Unité de Génétique Clinique, Hôpital Mère-enfant-CHU, 44093 Nantes Cedex 1, France
  12. 17012 Centre d'Etude du Bouchet, BP 3, 91740 Vert le Petit, France
  1. Dr Vergnaud,Gilles.Vergnaud{at}igmors.u-psud.fr

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Editor—Mental retardation is a component of a large number of syndromes, most of which qualify individually as rare genetic diseases. Altogether, mental retardation affects 2-3% of the population and is unexplained in 40% of cases. According to Knightet al,1 subtle telomeric chromosomal rearrangements are responsible for approximately 1% of unexplained mental retardation (with the proportion being highest, 7.4%, in the subclass of unexplained moderate to severe mental retardation). The identification of the genes responsible will require the precise delimitation of minimum deletion regions, which relies upon the collection of a large number of cases. Because of the low expected frequency of each telomeric deletion in mental retardation, the procedure to be applied should allow the screening of many patients at a low cost.

It is not yet clear whether all chromosome ends are associated with mental retardation syndromes with similar frequency. Distal chromosome 1p36 deletions were initially detected cytogenetically because of an associated segmental imbalance.2-5 This syndrome results from both interstitial and terminal deletions of varying sizes and different breakpoints6 and the severity of the phenotype is related to the extent of the deletion.7 Clinical examination can efficiently detect a large proportion of cases, so that the number of reports of 1p36 deletions has increased significantly in the past few years which may give the false impression that this is a relatively frequent syndrome.

We show here how highly polymorphic minisatellites located within a short region can provide an efficient prescreening of samples without the need for parental samples at the initial stage. The procedure was tested here using 1p36 minisatellites and provides an estimate of the frequency of 1p36 deletions in mentally retarded patients. A selection of five highly polymorphic minisatellite probes was used to search for 1p36.3 deletions in a …

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