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Original research
Targeted deep sequencing of DNA from multiple tissue types improves the diagnostic rate and reveals a highly diverse phenotype of mosaic neurofibromatosis type 2
  1. Yu Teranishi1,
  2. Satoru Miyawaki1,
  3. Hiroki Hongo1,
  4. Shogo Dofuku1,
  5. Atsushi Okano1,
  6. Shunsaku Takayanagi1,
  7. Takahiro Ota2,
  8. Jun Yoshimura3,
  9. Wei Qu3,
  10. Jun Mitsui4,
  11. Hirofumi Nakatomi1,
  12. Shinichi Morishita3,
  13. Shoji Tsuji4,
  14. Nobuhito Saito1
  1. 1Department of Neurosurgery, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
  2. 2Department of Neurosurgery, Tokyo Metropolitan Tama Medical Center, Fuchu, Tokyo, Japan
  3. 3Department of Computational Biology and Medical Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
  4. 4Department of Molecular Neurology, The University of Tokyo, Bunkyo-ku, Tokyo, Japan
  1. Correspondence to Dr Satoru Miyawaki, Department of Neurosurgery, The University of Tokyo, Bunkyo-ku 113-0033, Japan; miyawaki-tky{at}umin.ac.jp

Abstract

Background Although 60% of patients with de novo neurofibromatosis type 2 (NF2) are presumed to have mosaic NF2, the actual diagnostic rate of this condition remains low at around 20% because of the existing difficulties in detecting NF2 variants with low variant allele frequency (VAF). Here, we examined the correlation between the genotype and phenotype of mosaic NF2 after improving the diagnostic rate of mosaic NF2.

Methods We performed targeted deep sequencing of 36 genes including NF2 using DNA samples from multiple tissues (blood, buccal mucosa, hair follicle and tumour) of 53 patients with de novo NF2 and elucidated their genotype–phenotype correlation.

Results Twenty-four patients (45.2%) had the NF2 germline variant, and 20 patients with NF2 (37.7%) had mosaic NF2. The mosaic NF2 phenotype was significantly different from that in patients with NF2 germline variant in terms of distribution of NF2-related disease, tumour growth rate and hearing outcome. The behaviour of schwannoma correlated to the extent of VAF with NF2 variant in normal tissues unlike meningioma.

Conclusion We have improved the diagnostic rate of mosaic NF2 compared with that of previous studies by targeted deep sequencing of DNA from multiple tissues. Many atypical patients with NF2 diagnosed with ‘unilateral vestibular schwannoma’ or ‘multiple meningiomas’ presumably have mosaic NF2. Finally, we suggest that the highly diverse phenotype of NF2 could result not only from the type and location of NF2 variant but also the extent of VAF in the NF2 variant within normal tissue DNA.

  • neuromuscular disease
  • clinical genetics
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Footnotes

  • Contributors YT analysed and interpreted all clinical data. SM, JM, HN, SM, ST and NS designed the experiments. YT, HH, SD, AO, ST, TO and SM performed the experiments. JY, QW and SM performed the bioinformatic analysis. YT and SM interpreted the results and wrote the manuscript.

  • Funding This project was supported by a Grant-in-Aid for Scientific Research (B) (No. 17H04301) from the Japan Society for the Promotion of Science to NS, a Grant-in-Aid for Scientific Research (C) (No. 19K09499) from the Japan Society for the Promotion of Science to HN, a Grant-in-Aid for Scientific Research (C) (No. 19K09473) from the Japan Society for the Promotion of Science to SM, a Grant-in-Aid for Research Activity Start-up (No. 19K24023) from the Japan Society for the Promotion of Science to YT, a research grant from Japan Intractable Diseases (Nanbyo) Research Foundation to SM, a research grant from Takeda Science Foundation to SM and a MEXT KAKENHI (Grant No. 221S0002).

  • Competing interests None declared.

  • Patient consent for publication Not required.

  • Ethics approval The study protocol was approved by the Institutional Review Board of the University of Tokyo Hospital (G10026), and informed consent was obtained from all patients.

  • Provenance and peer review Not commissioned; externally peer reviewed.

  • Data availability statement Data are available on reasonable request. The authors confirm that the data supporting the findings of this study will be shared by request from any qualified investigator.

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