Background: Patients with cystic fibrosis with the same mutations in the cystic fibrosis transmembrane conductance regulator (CFTR) gene differ widely in survival suggesting other factors have a substantial role in mortality.
Objective: To determine if the genotype distribution of variants in three putative cystic fibrosis modifier genes (tumour necrosis factor α (TNFα), transforming growth factor β1 (TGFβ1) or mannose-binding lectin (MBL2)) differed among patients with cystic fibrosis grouped according to age and survival status.
Methods: Genotypes of four variants (TNFα-238, TNFα-308, TGFβ1-509 and MBL2 O) were determined in three groups of Caucasians from a single medical centre: 101 children with cystic fibrosis (aged <17 years; mean age 9.4 years), 115 adults with cystic fibrosis (aged ⩾17 years; mean age 30.8 years) and 38 non-surviving adults with cystic fibrosis (21 deceased and 17 lung transplant after 17 years of age). Genotypes of 127 healthy Caucasians in the same geographical region were used as controls. Kaplan–Meier and Cox hazard regression were used to evaluate the genotype effect on cumulative survival.
Results: Genotype frequencies among adults and children with cystic fibrosis differed for TNFα-238 (G/G vs G/A; p = 0.022) and MBL2 (A/A vs O/O; p = 0.016). When adults with cystic fibrosis were compared to non-surviving adults with cystic fibrosis, genotype frequencies of both genes differed (TNFα-238G/G vs G/A; p = 0.0015 and MBL2: A/A vs O/O; p = 0.009). The hazard ratio for TNFα-238G/G vs G/A was 0.25 (95% CI 0.06 to 1.0, p = 0.04) and for MBL2 O/O vs A/A or A/O was 2.5 (95% CI 1.3 to 4.9, p = 0.007).
Conclusions:TNFα-238 G/A and MBL2 O/O genotypes appear to be genetic modifiers of survival of cystic fibrosis.
- MBL, mannose-binding lectin
- SNP, single nucleotide polymorphism
- TGF, transforming growth factor
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Cystic fibrosis is the most common life-limiting autosomal recessive disease in Caucasians. Although the median age of survival for patients with cystic fibrosis is now almost 35 years, age at death among patients with cystic fibrosis varies substantially.1 Measures of the severity of lung disease, such as FEV1 and airway microbiology, are significant predictors of survival of cystic fibrosis as expected for a disease where 90% of mortality is attributed to pulmonary insufficiency.2–4 Epidemiologic analyses of the US CF Foundation Patient Registry have identified a number of other factors (eg, sex, birth cohort, symptoms and age at presentation, nutritional status and household income) that contribute to mortality.4–6 Although variation in the cystic fibrosis transmembrane conductance regulator (CFTR), the gene responsible for cystic fibrosis, has also been associated with survival, mortality of patients with the same CFTR genotype varies substantially.4,7 However, little is known about the contribution of other genes to cystic fibrosis survival.8
One study has demonstrated an association of variants in the mannose-binding lectin gene (MBL2) with severity of lung disease and survival in patients with cystic fibrosis.9 MBL binding of bacteria and viruses facilitates activation of an alternative complement pathway serving as primary defense especially in infant life. The “O” structural variants of MBL act in a partial dominant negative fashion to reduce the amount of functional MBL multimers in heterozygous (A/O) individuals, whereas primarily non-functional monomeric forms of MBL are found in the plasma of homozygous (O/O) individuals.10 A number of other studies have replicated the association between MBL2 variants and severity of cystic fibrosis lung disease but the association with cystic fibrosis survival has not been replicated.11–14 Functional variants in tumour necrosis factor α (TNFα) and transforming growth factor β1 (TGFβ1) have also shown reproducible association with cystic fibrosis lung disease severity,15–18 but neither gene has been evaluated for survival effect. TNFα is a potent pro-inflammatory cytokine secreted by macrophages, lymphocytes and adipocytes in response to stimuli such as lipopolysaccharide. In the airways, TNFα binding induces the release of cytokines IL 6 and IL 8 and increases mucous production via modulation of the TNF receptor-associated factor–TNFR1-associated death domain protein–nuclear factor κ B (TRAF–TRADD–NFκB) pathway.19,20 The profile of inflammatory mediators elevated in cystic fibrosis lung matches the transcriptional effect of NFκB, leading to the proposal that dysregulation of the NFκB pathway is central to the abnormal inflammatory status in patients with cystic fibrosis.21 Transforming growth factor β-1 (TGFβ1) is a multifunctional cytokine involved in many cellular functions. In the lungs, TGFβ1 secreted by bronchial epithelial cells promotes fibroblast proliferation in response to inflammation leading to lung fibrosis.16 TGFβ1 has been associated with lung diseases in animal models and in humans.
We hypothesised that as patients with cystic fibrosis age, genetic variants that affect cystic fibrosis survival should be easier to detect. Based on national cystic fibrosis data, annual mortality rates are relatively low before 17 years of age (1–2.4%) but rapidly increase thereafter (3–5.4%).1 Thus, we performed a case–control study of patients with cystic fibrosis grouped according to age as a proxy for survival. Genetic variants that increase survival were predicted to be enriched in patients aged >17 years when compared with patients aged <17 years. Conversely, genetic variants that decrease survival were predicted to be reduced in frequency in patients aged >17 years. We then compared genotypes of three genes implicated as cystic fibrosis modifiers (MBL2, TNFα and TGFβ1) among patients stratified according to survival status and age (children, aged <17 years and adults, aged ⩾17 years). To exclude the effects due to differences in the treatment of cystic fibrosis, we compared the frequency of genetic variants in the patients with cystic fibrosis surviving beyond 17 years of age with patients from the same birth cohort and medical centre who had died from complications of cystic fibrosis after 17 years of age.
MATERIALS AND METHODS
This study was approved by the Institutional Review Board of the Johns Hopkins Medical Institutions, and written informed consent was obtained from all participants or their parents. From the Johns Hopkins cystic fibrosis clinics, 254 Caucasian patients with cystic fibrosis (101 children ⩽17 years, 115 adults ⩾17 years and 38 “non-surviving” adult patients with cystic fibrosis (21 had died of cardiopulmonary complication and 17 had lung transplantation)) were recruited. The majority of cystic fibrosis adults were recruited between 1984 and 1988 while the children with cystic fibrosis were recruited from 2001 to 2003. All patients lived in the same geographical region (Baltimore and nearby areas). In all, 127 healthy Caucasian adults from the same geographical region as the patients with cystic fibrosis recruited from 1995 to 2003 were used as controls for this study. The forced expiratory volume in 1 s (FEV1) for each adult patient with cystic fibrosis was derived from at least two pulmonary function tests performed in 2002. Bacterial infection was documented after three separate oropharyngeal or sputum cultures were positive for the same organism.
Genotyping was performed by the sequence-specific oligonucleotide-PCR method as previously described.22,23 Briefly, DNA extracted from blood specimens by the phenol chloroform method was amplified by multiplex PCR using biotinylated primers. Hybridisation of the biotinylated PCR products to immobilised oligonucleotide probes specific to the alleles under study allowed colorimetric determination of genotype. Six single nucleotide polymorphisms (SNPs) of three genes (MBL2 B (rs 1800450), C (rs 1800451), D (rs 5030737) alleles; TNFα–238 (rs 361525) and –308 (rs 1800629) alleles, TGFβ1–509 (rs 1800469) alleles) were typed. To evaluate the validity of the sequence-specific oligonucleotide-PCR method, 44 masked subjects had MBL2 genotypes determined by DNA sequencing. A concordance of 100% was observed between the two methods.
Genotype frequencies were determined by counting and distributions of genotypes between patient and control groups were evaluated using χ2 and Fisher’s exact test. The effect of MBL2 and TNFα genotypes on survival was evaluated by Kaplan–Meier survival analysis. The log rank test was used to assess the statistical significance of the Kaplan–Meier plots. Hazard ratios (HRs) with 95% CIs and p values were calculated using Cox proportional hazards regression. Results of life-table analysis were evaluated for significance using the Wilcoxon statistic. Comparisons of multiple groups were assessed using analysis of variance (ANOVA). All statistical methods were performed using SPSS V.11.5. Statistical evaluation was performed under the a priori assumption that each gene was a cystic fibrosis modifier. A p value of ⩽0.05 was deemed significant.
Table 1 shows the demographics of the patient and control groups used in this study.
Adults with cystic fibrosis and non-surviving adults with cystic fibrosis are from the same birth cohort while the adult control group has older individuals. All individuals were typed for six SNPs selected from three genes (MBL2, TNFα and TGFβ1) that have been associated with the severity of cystic fibrosis lung disease. To test for association with survival, we compared the genotype frequencies of each SNP between cystic fibrosis adults and children. Variants in two genes, MBL2 and TNFα, demonstrated significant differences in genotype distribution between these two groups (table 2). For the MBL2 gene, the difference in genotype distribution is due to a deficiency of O/O genotypes in adults with cystic fibrosis compared to children with cystic fibrosis. The distribution of A/A and A/O genotypes does not deviate significantly between these two groups. For TNFα, the difference between the two groups is due to a higher frequency of the TNFα–238 G/A genotype in adults with cystic fibrosis compared to children with cystic fibrosis. These results suggest that MBL2 O/O is associated with reduced survival beyond 17 years of age while TNFα–238G/A appears to be associated with an increased chance of surviving beyond 17 years of age (table 2).
To test these associations, we compared the genotype frequencies of the SNPs in adults with cystic fibrosis to adults with cystic fibrosis from the same birth cohort and cystic fibrosis clinic who had died from the disease after 17 years of age. The O/O genotype of MBL2 was higher in non-survivors compared to the adults with cystic fibrosis as expected for a negative modifier of survival (table 3). In addition, the TNFα–238 G/A genotype was absent in non-surviving adults with cystic fibrosis compared to the adults with cystic fibrosis, consistent with positive modifier effect on survival (table 3).
To evaluate the contribution of CFTR genotype, homozygotes for the common cystic fibrosis mutation ΔF508 were compared with “other” CFTR genotypes and there were no differences. However, the non-surviving adults with cystic fibrosis had a higher fraction of ΔF508 homozygotes (n = 24; 63%) compared with surviving adults with cystic fibrosis (n = 60; 52%), and the difference approached statistical significance (tables 2 and 3).
The distributions of the MBL2 and TNFα genotypes in each group did not deviate from the distributions predicted by the Hardy–Weinberg equation (not shown). Furthermore, when adults with cystic fibrosis and non-surviving adults with cystic fibrosis were reconstituted into a single birth cohort, the distribution of MBL2 and TNFα genotypes did not differ from children with cystic fibrosis, or from healthy controls from the same geographical region (table 4). These results indicate that the genotype differences between adults with cystic fibrosis and non-surviving adults with cystic fibrosis are not due to biased ascertainment of either group.
The CFTR genotype distribution in the combined adult with cystic fibrosis group did not differ significantly from the children with cystic fibrosis (table 4), or the 17 836 genotyped patients enrolled in the US–CF Foundation Registry (data not shown). Finally, no significant difference was observed in the distribution of MBL2 or TNFα genotypes in the adults with cystic fibrosis and non-surviving adults with cystic fibrosis homozygotic for ΔF508 compared with patients with other CFTR genotypes (table 5).
Kaplan–Meier survival analyses of the adults with cystic fibrosis and non-surviving adults with cystic fibrosis based on genotype illustrated that individuals with cystic fibrosis with MBL2 O/O genotype have a survival disadvantage (p = 0.004, log rank), while those with TNFα–238 G/A genotype have a marked survival advantage (p = 0.03, log rank, fig 1A,B). CFTR genotype does not influence survival until patients surpass 33 years of age, after which, homozygosity for ΔF508 is associated with reduced survival compared to other CFTR genotypes (p = 0.03, log rank, fig 1C). Life-table analysis showed that median survival time of patients with MBL2 A/A or A/O genotype differed significantly from patients with the O/O (41 and 27 years, respectively; p = 0.02; Wilcoxon statistic). Similarly, median survival of patients with TNFα G/G genotypes differed significantly from patients with the G/A (50 and > 50 years, respectively; p = 0.04; Wilcoxon statistic). Patients with cystic fibrosis carrying the MBL2 O/O genotype compared with patients with cystic fibrosis carrying A/A or A/O have a hazard ratio (HR) of 2.5 (95% CI 1.3 to 4.9, p = 0.007). Other comparisons of MBL2 genotypes were not significant. The TNF–238 G/A genotype is associated with a reduced HR of 0.25 (95% CI 0.06 to 1.0, p = 0.04) when compared with patients with cystic fibrosis bearing the G/G genotype. The absence of patients with the TNF–238A/A genotype precluded calculation of HRs for this genotype. The HR for CFTR genotype does not reach statistical significance (not shown).
Mean percentage predicted FEV1 (the measurement of pulmonary function most predictive of the severity of cystic fibrosis lung disease) and the frequency of Pseudomonas aeruginosa and Burkholderia infection (bacterial pathogens that contribute to reduced longevity in patients with cystic fibrosis) did not differ between surviving adult patients with cystic fibrosis carrying the A/A and A/O MBL genotypes (mean % predicted FEV1 61% vs 58%; Pseudomonas 94% vs 89%; Burkholderia 2.6% vs 2.8%, respectively). Too few surviving patients with the MBL2 O/O genotype were available for meaningful analysis of FEV1. All seven adult patients with cystic fibrosis (two surviving, five deceased) with the MBL2 O/O genotype had P aeruginosa infection and none had Burkholderia infection. The difference in mean percentage predicted FEV1 between surviving adult patients with cystic fibrosis carrying the TNF-238 G/A and those with the G/G genotype was not statistically significant (G/A 65.3%; n = 21; G/G 59.9%; n = 89; ANOVA p = 0.12). The frequency of P aeruginosa and B cepacia infection did not differ significantly between surviving adults with cystic fibrosis with G/A and G/G genotypes (P aeruginosa 95.2% vs 93.6%; B cepacia 0% vs 4.2%, respectively).
Numerous studies have investigated the association between candidate genes and different aspects of the cystic fibrosis phenotype.8,24 Replication of associations in multiple independent patient populations is a key step in confirming a pathologic role for a protein variant in a disease process. CFTR genotype has been associated with survival7 and Kaplan–Meier analysis of patients in this study suggest that the survival effect of CFTR may be age dependent (ie, after 33 years of age). We show that variation in MBL2 is associated with reduced survival, replicating the finding of Garred et al.9 However, in this study, only the less common O/O MBL2 genotype appeared to influence survival. We have also discovered an association between a relatively common variant in TNFα and mortality due to cystic fibrosis. Although two other studies have shown association between variants of TNFα and lung disease severity,15,16 this is the first study to suggest that variation in TNFα modifies cystic fibrosis survival. Finally, TNFα appears to be the first modifier gene with a genotype associated with an improved outcome in cystic fibrosis.
A number of studies have suggested that MBL2 alleles are associated with the severity of lung disease in cystic fibrosis. In three studies, patients with cystic fibrosis who carried MBL2 genotypes A/O or O/O alleles had more severe lung disease as judged by FEV1% predicted than their A/A counterparts (p values 0.03, 0.04 and 0.002, respectively).9,11–14 One study found that only O/O patients had significantly worse lung function (p<0.05).25 This study involved 260 children and 298 adults with cystic fibrosis although the effect of the MBL2 O/O genotype was confined to adults. We also did not find a difference in lung function when comparing adults with cystic fibrosis with A/A and A/O genotypes and too few O/O individuals were available for meaningful comparisons. A study utilising the concentration of MBL in plasma found that mean FEV1% predicted was significantly lower in MBL-deficient patients aged >15 years.14 Together, these studies suggest that the deleterious consequences of MBL deficiency become apparent in patients with cystic fibrosis as they age, particularly in those with severe MBL deficiency associated with the O/O genotype. Thus, survival would be expected to reduce in patients with the MBL2 O/O genotype after adolescence. This concept is consistent with our observation that MBL2 O/O is under represented in adults with cystic fibrosis compared with children with cystic fibrosis and over represented in patients that died after 17 years of age compared with adults with cystic fibrosis.
A recent multi-centre study involving 808 ΔF508 homozygote patients with cystic fibrosis did not reveal association between lung disease severity and MBL2 genotype, and MBL2 genotype frequencies did not differ significantly in 56 non-surviving patients with cystic fibrosis.18 A possible clue to lack of MBL2 association may be due to differences in study design; the large-scale case–control study of 808 patients required recruitment from many cystic fibrosis centres whereas the studies that found association between MBL2 and lung function primarily involved patients from a single cystic fibrosis centre. Collection of study subjects from a single centre affords a degree of control over variation in non-genetic factors (ie, access to care, treatment and phenotype definition) that is difficult to control in multi-centre studies. Thus, single-centre studies can have higher power than multi-centre studies to detect genetic contribution to outcomes that have a substantial non-genetic component.24 Second, the non-survivor group studied by Drumm and colleagues had a greater proportion of transplanted patients (47/56; 84%) compared with the single-centre studies that found an association with survival (17/38; 45% in this study and 12/26; 46%9). Criteria for lung transplantation have a low positive predictive value for mortality (∼30%) making transplantation an imperfect proxy in survival studies.26 The high proportion of transplantation patients in the Drumm study may have made their non-survivor group less representative of mortality risk factors than the current study and the study of Garred and colleagues.9 Finally, the Drumm study primarily involved adult patients with cystic fibrosis in whom the effect of the MBL2O/O genotype on lung function and survival might have been difficult to discern without comparing to a younger cystic fibrosis cohort (as noted above).
Although this study found the TNFα–238 G/A allele associated with survival, we were unable to correlate this allele with mean FEV1. Likewise, the −238 alleles did not show association with pulmonary function measurements in a study of 113 patients with cystic fibrosis.16 These results suggest that the −238 A allele might improve survival by affecting other life-limiting manifestations in patients with cystic fibrosis. Monocytes bearing the −238 A variant have been shown to produce lower amounts of TNFα in response to stimulation than those homozygous for −238 G.27 The presence of a transcriptional repressor site that incorporates nucleotides between −254 and −230 suggests that the reduced expression might be attributed directly to variation at −238.28 Alternatively, sequence variants such as TNFα–376 A that are in linkage disequilibrium with −238 A may be responsible for altered transcription. The −376 A variant has been shown to regulate TNFα transcription by altering binding of the transcription factor OCT-1.29 Thus, patients with cystic fibrosis bearing the −238 A allele might have global reductions in TNFα levels leading to a life-long decrease in inflammatory status compared with patients who are homozygous for the G allele.
Association between TGFβ1 alleles and lung function in patients with cystic fibrosis was first reported in 171 ΔF508 homozygotes. Individuals carrying the T/T codon 10 genotype (+869) reached an FEV1% predicted below 50% significantly earlier in age than patients with other genotypes at this SNP.17 Average age at death did not differ for TGFβ1 genotypes at codon 10 or codon 25 (+915). A second study involving 808 ΔF508 homozygote patients with cystic fibrosis reported that the C/C genotype of codon 10 and the T/T genotype at −509 were associated with severe lung disease. Survival analysis was not performed. Although we were unable to show a significant association between TGFβ1-509 genotypes and survival, the frequency of the −509 T allele in adults with cystic fibrosis (0.26) compared with non-surviving adults with cystic fibrosis (0.40) approached significance (p = 0.07). Thus, the current study may be under powered to detect the effect of TGFβ1 variation upon cystic fibrosis survival.
In summary, we have replicated and refined the observation that variation in MBL2 contributes to cystic fibrosis survival.9 In addition, we show that a putative promoter polymorphism in TNFα influences survival of patients with cystic fibrosis. Both of these genes encode proteins involved in the inflammatory response. These findings are consistent with the potential role of inflammatory mediators in cystic fibrosis pathophysiology that has been emphasised in numerous studies, and also highlights the potential role of anti-inflammatory agents in the treatment of cystic fibrosis.21,30
We thank the patients and parents for their participation in this study; Donna Peeler, Linda Packham, Michelle Noschese, Sharon Watts, Kathie Bukowski and Noah Lechtzin for assistance with collecting blood specimens; Rita McWilliams and John McGready for assistance with statistical analysis; Tricia Cornwall for technical assistance and Nulang Wang for assistance with genotyping.
Published Online First 11 December 2006
Funding: This study is supported by grants from the Cystic Fibrosis Foundation (US), the NHLBI (HL68927, HL6618 and HL71847) and the NIDDK (DK44003).
Competing interests: Suzanne Cheng and Lori Steiner are employees of Roche Molecular Systems Inc. that provided genotyping reagents under a research collaboration. Garry R Cutting is a Consultant for Roche Molecular Systems.
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