Exome sequence read depth methods for identifying copy number changes

L Kadalayil, S Rafiq, MJJ Rose-Zerilli… - Briefings in …, 2015 - academic.oup.com
Copy number variants (CNVs) play important roles in a number of human diseases and in
pharmacogenetics. Powerful methods exist for CNV detection in whole genome sequencing …

Associations of breast cancer risk factors with tumor subtypes: a pooled analysis from the Breast Cancer Association Consortium studies

XR Yang, J Chang-Claude, EL Goode… - Journal of the …, 2011 - academic.oup.com
Background Previous studies have suggested that breast cancer risk factors are associated
with estrogen receptor (ER) and progesterone receptor (PR) expression status of the tumors …

[HTML][HTML] Inherited mutations in 17 breast cancer susceptibility genes among a large triple-negative breast cancer cohort unselected for family history of breast cancer

FJ Couch, SN Hart, P Sharma, AE Toland… - Journal of clinical …, 2015 - ncbi.nlm.nih.gov
Purpose Recent advances in DNA sequencing have led to the development of breast cancer
susceptibility gene panels for germline genetic testing of patients. We assessed the …

A common variant at the TERT-CLPTM1L locus is associated with estrogen receptor–negative breast cancer

CA Haiman, GK Chen, CM Vachon, F Canzian… - Nature …, 2011 - nature.com
Estrogen receptor (ER)-negative breast cancer shows a higher incidence in women of
African ancestry compared to women of European ancestry. In search of common risk alleles …

A novel prognostic model in myeloma based on co-segregating adverse FISH lesions and the ISS: analysis of patients treated in the MRC Myeloma IX trial

KD Boyd, FM Ross, L Chiecchio, GP Dagrada, ZJ Konn… - Leukemia, 2012 - nature.com
The association of genetic lesions detected by fluorescence in situ hybridization (FISH) with
survival was analyzed in 1069 patients with newly presenting myeloma treated in the …

Recurrent SETBP1 mutations in atypical chronic myeloid leukemia

R Piazza, S Valletta, N Winkelmann, S Redaelli… - Nature …, 2013 - nature.com
Atypical chronic myeloid leukemia (aCML) shares clinical and laboratory features with CML,
but it lacks the BCR-ABL1 fusion. We performed exome sequencing of eight aCMLs and …

PALB2, CHEK2 and ATM rare variants and cancer risk: data from COGS

MC Southey, DE Goldgar, R Winqvist… - Journal of medical …, 2016 - jmg.bmj.com
Background The rarity of mutations in PALB2, CHEK2 and ATM make it difficult to estimate
precisely associated cancer risks. Population-based family studies have provided evidence …

Mapping of Chromosome 1p Deletions in Myeloma Identifies FAM46C at 1p12 and CDKN2C at 1p32.3 as Being Genes in Regions Associated with Adverse Survival

KD Boyd, FM Ross, BA Walker, CP Wardell… - Clinical cancer …, 2011 - AACR
Purpose: Regions on 1p with recurrent deletions in presenting myeloma patients were
examined with the purpose of defining the deletions and assessing their survival impact …

A meta-analysis of genome-wide association studies of breast cancer identifies two novel susceptibility loci at 6q14 and 20q11

A Siddiq, FJ Couch, GK Chen… - Human molecular …, 2012 - academic.oup.com
Genome-wide association studies (GWAS) of breast cancer defined by hormone receptor
status have revealed loci contributing to susceptibility of estrogen receptor (ER)-negative …

Genome-wide association study identifies 25 known breast cancer susceptibility loci as risk factors for triple-negative breast cancer

KS Purrington, S Slager, D Eccles… - …, 2014 - academic.oup.com
Triple-negative (TN) breast cancer is an aggressive subtype of breast cancer associated
with a unique set of epidemiologic and genetic risk factors. We conducted a two-stage …