Transcription regulation by distal enhancers: who's in the loop?

R Stadhouders, A van den Heuvel, P Kolovos… - …, 2012 - Taylor & Francis
Genome-wide chromatin profiling efforts have shown that enhancers are often located at
large distances from gene promoters within the noncoding genome. Whereas enhancers …

Multiplexed chromosome conformation capture sequencing for rapid genome-scale high-resolution detection of long-range chromatin interactions

R Stadhouders, P Kolovos, R Brouwer, J Zuin… - Nature protocols, 2013 - nature.com
Chromosome conformation capture (3C) technology is a powerful and increasingly popular
tool for analyzing the spatial organization of genomes. Several 3C variants have been …

Dynamic long‐range chromatin interactions control Myb proto‐oncogene transcription during erythroid development

R Stadhouders, S Thongjuea, C Andrieu‐Soler… - The EMBO …, 2012 - embopress.org
The key haematopoietic regulator Myb is essential for coordinating proliferation and
differentiation. ChIP‐Sequencing and Chromosome Conformation Capture (3C) …

Single-cell RNA sequencing in facioscapulohumeral muscular dystrophy disease etiology and development

A van den Heuvel, A Mahfouz, SL Kloet… - Human molecular …, 2019 - academic.oup.com
Facioscapulohumeral muscular dystrophy (FSHD) is characterized by sporadic de-
repression of the transcription factor DUX4 in skeletal muscle. DUX4 activates a cascade of …

[HTML][HTML] TRIM33 switches off Ifnb1 gene transcription during the late phase of macrophage activation

F Ferri, A Parcelier, V Petit, AS Gallouet… - Nature …, 2015 - nature.com
Despite its importance during viral or bacterial infections, transcriptional regulation of the
interferon-β gene (Ifnb1) in activated macrophages is only partially understood. Here we …

[HTML][HTML] Facioscapulohumeral dystrophy transcriptome signatures correlate with different stages of disease and are marked by different MRI biomarkers

A van den Heuvel, S Lassche, K Mul, A Greco… - Scientific Reports, 2022 - nature.com
With several therapeutic strategies for facioscapulohumeral muscular dystrophy (FSHD)
entering clinical testing, outcome measures are becoming increasingly important …

[HTML][HTML] Multiscale 3D-printing of microfluidic AFM cantilevers

RCLN Kramer, EJ Verlinden, L Angeloni… - Lab on a Chip, 2020 - pubs.rsc.org
Microfluidic atomic force microscopy (AFM) cantilever probes have all the functionalities of a
standard AFM cantilever along with fluid pipetting. They have a channel inside the cantilever …

[HTML][HTML] Systemic delivery of a DUX4-targeting antisense oligonucleotide to treat facioscapulohumeral muscular dystrophy

LF Bouwman, B den Hamer, A van den Heuvel… - … Therapy-Nucleic Acids, 2021 - cell.com
Facioscapulohumeral muscular dystrophy (FSHD) is one of the most prevalent skeletal
muscle dystrophies. Skeletal muscle pathology in individuals with FSHD is caused by …

The SCL/TAL1 transcription factor represses the stress protein DDiT4/REDD1 in human hematopoietic stem/progenitor cells

A Benyoucef, J Calvo, L Renou, ML Arcangeli… - Stem Cells, 2015 - academic.oup.com
Hematopoietic stem/progenitor cells (HSPCs) are regulated through numerous molecular
mechanisms that have not been interconnected. The transcription factor stem cell …

Long-range gene regulation and novel therapeutic applications

A van den Heuvel, R Stadhouders… - Blood, The Journal …, 2015 - ashpublications.org
An intimate relationship exists between nuclear architecture and gene activity. Unraveling
the fine-scale three-dimensional structure of the genome and its impact on gene regulation …