Chromosomal imbalance letter
372 kb microdeletion in 18q12.3 causing SETBP1 haploinsufficiency associated with mild mental retardation and expressive speech impairment

https://doi.org/10.1016/j.ejmg.2012.01.005Get rights and content

Abstract

Several cases of interstitial deletion encompassing band 18q12.3 are described in patients with mild dysmorphic features, mental retardation and impairment of expressive language. The critical deleted region contains SETBP1 gene (SET binding protein 1). Missense heterozygous mutations in this gene cause Schinzel-Giedion syndrome (SGS, MIM#269150), characterized by profound mental retardation and multiple congenital malformations. Recently, a 18q12.3 microdeletion causing SETBP1 haploinsufficiency has been described in two patients that show expressive speech impairment, moderate developmental delay and peculiar facial features. The phenotype of individual with partial chromosome 18q deletions does not resemble SGS. The deletion defines a critical region in which SETBP1 is the major candidate gene for expressive speech defect. We describe an additional patient with the smallest 18q12.3 microdeletion never reported that causes the disruption of SETBP1. The patient shows mild mental retardation and expressive speech impairment with striking discrepancy between expressive and receptive language skills. He is able to communicate using gestures and mimic expression of face and body with surprising efficacy. The significant phenotypic overlap between this patient and the cases previously reported enforce the hypothesis that SETBP1 haploinsufficiency may have a role in expressive language development.

Highlights

► SETBP1 haploinsufficiency is related with expressive speech impairment. ► Array-CGH revealed a cryptic microdeletion in an apparently balanced translocation. ► SETBP1 analysis in patients with developmental delay, behavioural problems, verbal dyspraxia.

Section snippets

Cytogenetics

Chromosome analysis was performed according to standard procedures on QFQ-banded metaphase spread from peripheral blood lymphocytes at 350/450-band level. Conventional chromosomal analysis showed the presence of an apparently balanced translocation [46XY, t(2; 18)(q24; q21)]. Parental karyotypes are normal, indicating that the rearrangement originated de novo.

Array-CGH

To further characterize the rearrangement, an oligo array-CGH was performed using the Human Genome CGH 44K Microarray Kit (Agilent

Clinical description

A 5 year old boy was referred to us for speech delay. The patient was the third child of healthy unrelated Caucasian parents with two healthy siblings. Family history revealed maternal grandmother with epilepsy and one maternal cousin with mental retardation. The patient was born after an uneventful term pregnancy. Delivery was normal and birth weight was 3650 g (0 DS), length was 49 cm (0 SDS), and head circumference was 35 cm (0 SD). There was no notion of muscular hypotonia, sucking reflex

Discussion

Proximal interstitial 18q deletions involving cytobands q12 to q21 are described in the literature and define the rare del(18)(q12.2-q21.1) syndrome. The common findings described in patients with proximal interstitial 18q deletions are minor facial anomalies (telecanthus, frontal bossing, deep-set eyes, midface hypoplasia), lack of major congenital defects, hypotonia, mental retardation of variable degree, behavioural disorders (autism spectrum disorder, hyperactivity, aggression), and

Acknowledgements

We would like to thank the patient and his family for their cooperation.

References (13)

  • S. Bouquillon et al.

    A 5.3Mb deletion in chromosome 18q12.3 as the smallest region of overlap in two patients with expressive speech delay

    Eur. J. Med. Genet.

    (2011)
  • A. Magi et al.

    A shifting level model algorithm that identifies aberrations in array-CGH data

    Biostatistics

    (2010)
  • M. Benelli et al.

    A very fast and accurate method for calling aberrations in array-CGH data

    Biostatistics

    (2010)
  • A. Schinzel et al.

    Interstitial deletion of the long arm of chromosome 18, del(18)(q12.2q21.1): a report of three cases of an autosomal deletion with a mild phenotype

    J. Med. Genet.

    (1991)
  • M. Poissonnier et al.

    Interstitial deletion of the proximal region of the long arm of chromosome 18, del(18q12) a distinct clinical entity? A report of two new cases

    Ann. Genet.

    (1992)
  • B.T. Tinkle et al.

    Long-term survival in a patient with del(18)(q12.2q21.1)

    Am. J. Med. Genet.

    (2003)
There are more references available in the full text version of this article.

Cited by (0)

View full text