human phenotype ontology

Clinical interpretation of CNVs with cross-species phenotype data
Sebastian Köhler, Uwe Schoeneberg, Johanna Christina Czeschik, Sandra C Doelken, Jayne Y Hehir-Kwa, Jonas Ibn-Salem, Christopher J Mungall, Damian Smedley, Melissa A Haendel, Peter N Robinson

Journal of Medical Genetics Nov 2014, 51 (11) 766-772; DOI: 10.1136/jmedgenet-2014-102633

CLINICAL
- Cardiovascular medicine
  - Arrhythmias (33)
  - Cardiomyopathy (95)
  - Congenital heart disease (93)
  - Hypertension (63)
  - Ischaemic heart disease (48)
  - Valvar diseases (32)
  - Venous thromboembolism (4)
- Dermatology (272)
- Diagnostics
  - Clinical diagnostic tests (399)
  - Surgical diagnostic tests (120)
- Drugs and medicines
- Endocrinology
  - Adrenal disorders (9)
  - Calcium and bone (344)
  - Diabetes (113)
  - Drugs: endocrine system (125)
  - Lipid disorders (34)
  - Metabolic disorders (386)
  - Pituitary disorders (13)
  - Thyroid disease (24)
- Evidence based practice
  - Critical appraisal literature
- Gastroenterology
  - Infection (gastroenterology) (2)
  - Inflammatory bowel disease (17)
  - Liver disease (56)
  - Neurogastroenterology (24)
  - Oesophagus (32)
  - Pancreas and biliary tract (124)
  - Pancreatitis (14)
  - Portal hypertension (2)
  - Small intestine
    - Coeliac disease (15)
  - Stomach and duodenum (16)
- Genetics
  - Clinical genetics (289)
  - Cytogenetics (26)
  - Genetic screening / counselling (1075)
  - Molecular genetics (1454)
- Haematology (incl blood transfusion) (8)
- Immunology (including allergy) (732)
- Infectious diseases
  - Bone and joint infections (1)
  - Drugs: infectious diseases (45)
  - Emerging infectious diseases
    - Bird flu
  - Foodborne infections (2)
  - Hepatitis and other GI infections (9)
  - Influenza
  - Meningitis (3)
  - Nosocomial infections
  - Otitis (13)
  - Pneumonia (infectious disease) (4)
  - TB and other respiratory infections (25)
  - Travel medicine (4)
  - Tropical medicine (infectious diseases) (7)
  - Urinary tract infections (1)
  - Vaccination / immunisation (4)
- Neurology
  - Cerebral palsy (5)
  - Cranial nerves
  - Dementia (35)
  - Drugs: CNS (not psychiatric)
  - Epilepsy and seizures (236)
  - Headache (including migraine) (8)
  - Hydrocephalus (19)
  - Infection (neurology)
  - Motor neurone disease (22)
  - Movement disorders (other than Parkinsons) (54)
  - Multiple sclerosis (25)
  - Muscle disease (176)
  - Neuroimaging
  - Neurological injury
  - Neuromuscular disease (301)
  - Neurooncology (89)
  - Pain (neurology)
  - Parkinson's disease (22)
  - Peripheral nerve disease (106)
  - Sleep disorders (neurology)
  - Spinal cord
  - Stroke
  - Trauma CNS / PNS
  - Variant Creutzfeld-Jakob Disease
- Nutrition and metabolism
  - Obesity (nutrition) (74)
- Obstetrics and gynaecology
  - Reproductive medicine (586)
- Oncology
  - Breast cancer (276)
  - Cancer: dermatological (50)
  - CNS cancer (53)
  - Colon cancer (147)
  - Endocrine cancer (65)
  - Gastric cancer
  - Gene therapy (3)
  - Head and neck cancer (7)
  - Hepatic cancer (9)
  - Lung cancer (oncology) (16)
  - Oesophageal cancer (6)
  - Paediatric oncology (140)
  - Prevention (6)
  - Prostate cancer (29)
  - Screening (oncology) (268)
  - Urological cancer (79)
- Ophthalmology
  - Eye Diseases (351)
  - Glaucoma (22)
  - Hereditary eye disease (103)
  - Neuroophthalmology
  - Visual development (9)
- Psychiatry
  - Memory disorders (psychiatry) (80)
  - Psychotic disorders (incl schizophrenia) (33)
- Rehabilitation medicine
  - Disability
  - Other rehabilitative therapies
  - Physiotherapy
- Respiratory medicine
  - Asthma (25)
  - Cystic fibrosis (44)
  - Interstitial lung disease (11)
  - Pulmonary emphysema (3)
  - Pulmonary hypertension (7)
- Rheumatology
  - Connective tissue disease (113)
  - Osteoarthritis (13)
  - Osteoporosis (19)
  - Rheumatoid arthritis (18)
  - Systemic lupus erythematosus (8)
  - Vascularitis (3)
- Surgery (120)
NON-CLINICAL
- Epidemiology (722)
- Ethics (232)
- Medical humanities
Special collections
- Editor's choice (125)
- Guidelines, Recommendations and Consensus Statements
- JMG Online mutation reports (169)
- Open access (324)
- Press releases (5)

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human phenotype ontology