Table 1

Primers, PCR conditions, and cycles used for mapping within the NPAS3 and KIAA0391 genes

MarkerMap positionPrimer sequence (5′→3′)PCR product size (bp)MgCl2 (mmol/l)
The PCR cycle is 94°C-four minutes, 30 cycles of 94°C-30 seconds, 57°C-30 seconds; followed by 72°C-five minutes final extension.
SDK5NPAS3 exon 1F-TTGAAGAGGTCCTTCACATC1421.5
R-CGGTTATAGCAGCATGATTT
AEX2NPAS3 exon 2F-TGACCAGAGCATTATGGCATT1841.5
R-AAATTGGTTCAGCAGCAAGG
I2DKNPAS3 intron 2F-CCTGCTGGACATCAGTGCTA2321.5
R-TCCCTGTAGAGGCAAGCAGT
I3DKNPAS3 intron 2F-GGCAACAAGAGCAGAACTCC2081.5
R-GGGCTTCCCTGGTAAAGAAC
I4DKNPAS3 intron 2F-GGATGCAGAAGCAGATAGGC2321.5
R-GCTCAGTCCACTCCGAACTC
I5DKNPAS3 intron 2F-GTTTGGTAAGCAGGCCACAT1891.5
R-CCTACCCAGGCCAAACACTA
I6DKNPAS3 intron 2F-GTGAGTGCTCAGGTTGCGTA1991.5
R-CCATACAGTGAGGCCTGGTT
I7DKNPAS3 intron 2F-AGGCCTCCCTTAACTGTGGT2251.5
R-CCACCACCCTCTGAAACAGT
I8DKNPAS3 intron 2F-AGGTTTGAGAGGGGTGAGGT2111.5
R-CATGTCCAAGGGGGATTATG
66M11SLNPAS3 intron 3F-AATGTGATGCCCTGATGGAT1561.5
R-TGGGTTTTGATTGACAGCAA
66M11SRNPAS3 intron 3F-TGCAGTCAACAGGTGCTTTC1501.5
R-CTTTTCCTCCCACTGCTGAG
SDK1NPAS3 intron 3F-TTTCCTGCAGTCCCTGGAT1001.5
R-GCTTCATAATCGCTGCCAAG
SDK2NPAS3 intron 3F-CTGACAGGCAGCAGTGTCTT1371.5
R-TCTCCGACTGAGAGGAGGAA
1075M22SLNPAS3 intron 5F-ACAAGCCCTTACCCTTTTGG1441.5
R-GGGCACTCCTTTTTCCTTTC
1078I14SRNPAS3 intron 6F-AACTGGTAATCACCCCACCA1521.5
R-GCACTGAGCAAAGCTTGACA
SDK6KIAA0391 exon 3F-GGGCTGTGGAAAAACCATAG1001.5
R-CTGGTCACCTCCATCTATCACA
K4DKKIAA0391 intron 3F-TCCCCTCTCAAAAGGTGAT1941.5
R-CATTCTCAGGATGGCTGGT
K3DKKIAA0391 intron 3F-AGCACTGTTGGGGACATAG2071.5
R-TTCTGGGTTAGGGGAGGAG
K2DKKIAA0391 intron 3F-TCCAAGAGCCAACAAAATC2341.5
R-TGCTGGCCTTAAAAGCCTT
K1DKKIAA0391 intron 3F-GGGCCTTGAGTGAGACTCTG1281.5
R-CGTTTCCAAAAGCAGAGGAG
SDK7KIAA0391 exon 4F-AACTTAAGAGATTTGAGAACTTCA981.5
R-TTCACGAACTTTAGGAAACA