Table 2

Spectrum of GA1 mutations, haplotype associations, and origin of alleles

Exon Mutation Base change No Haplotype CpG Novel Origin
IVS2-2A>Tc.138-2A>T1bxGermany
3W50Cc.150G>C1xChile
219delCc.219delC1axGermany
Q76Xc.226C>T1bxGermany
R88Cc.262C>T52-150 axAustria
5Y113Hc.337T>C32-152 hxChile
R128Qc.383G>A32-150 axxTurkey2-150, Germany
R132Qc.395G>A2a, bxxTurkey, Germany
V133Mc.397G>A1axChile
R138Kc.413G>A1axEngland
V148Ic.442G>A1hxEngland
R161Qc.482G>A1axChile
IVS5+1G>Ac.515+1G>A22-150 axPalestine
6C176Rc.526T>C1bxIndonesia
E181Qc.541G>C1hxTurkey
G185Ac.554G>C1axGermany
A195Tc.583G>A1hAustria
IVS6-1G>Ac.636-1G>A1hxGreece
7P217Lc.650C>T22-150 axGreece
R227Pc.680G>C3aUSA, England
F236Lc.706T>C1aGermany
P248Lc.743C>T62-151 axTurkey2-151, Italy
R257Wv769C>T1cxGermany
S259Pc.775T>C3axGermany
P278Sc.832C>T1hGermany
8A293Tc.877G>A22-150 hxChile
L309Wc.926T>G1bEngland
R313Qc.938G>A1bxxGermany
9R355Hc.1064G>A32-150 hxGermany2-150, Turkey
10E365Kc.1093G>A52-151 a, (b)xTurkey2-151, USA
A385Vc.1154C>T1hxChile
R386Xc.1156C>T1bxGermany
R402Wc.1204C>T242-151 h, (a)xGermany, Europe
R402Qc.1205G>A22-150 axGermany
L407Pc.1220T>C22-150 hTurkey
Y413Xc.1239C>A1axGreece
11A421V (Amish)c.1262C>T72-150 hGermany, Austria, Italy, Croatia
T429Mc.1286C>T1axGermany
Total38961420
  • Haplotype = haplotype as denoted in table 3; CpG = hypermutable CpG mutation; Novel = novel mutation.

  • 2-150 = homozygous in one patient;

  • 2-151 = homozygous in more than one patient;

  • 2-152 = apparent homozygosity in one patient that could also be the result of hemizygosity with a large deletion on the paternal chromosome. Haplotypes in parentheses were found on single chromosomes only. The numbering of cDNA nucleotides (c.) follows the recommendation of the Nomenclature Working Group9 and starts with 1 at the initiator codon; values are therefore 36 nucleotides smaller than those used in previous publications on GA1 mutations.