Table 2
The minimum physical length of UPD regions detectable by HMA10K and HMA100K
| Chr | Chr. length (Mb) | HMA10K | HMA100K | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| No. of SNPs | Average distance between SNPs (Mb) | Minimum no. of SNPs in UPD region* | Minimum UPD region length* (Mb) | No. of SNPs | Average distance between SNPs (Mb) | Minimum no. of SNPs in UPD region* | Minimum UPD region length* (Mb) | |||||||||||
| Chr., chromosome; *95% power and 0.05 significance level. | ||||||||||||||||||
| 1 | 245 | 877 | 0.32 | 63 | 19.76 | 9200 | 26.64 | 179 | 4.74 | |||||||||
| 2 | 242 | 962 | 0.29 | 63 | 17.87 | 10339 | 23.45 | 199 | 4.64 | |||||||||
| 3 | 199 | 813 | 0.28 | 51 | 14.18 | 7814 | 25.43 | 169 | 4.27 | |||||||||
| 4 | 191 | 816 | 0.27 | 51 | 13.73 | 8563 | 22.32 | 179 | 3.97 | |||||||||
| 5 | 181 | 780 | 0.26 | 51 | 12.99 | 8357 | 21.61 | 169 | 3.63 | |||||||||
| 6 | 171 | 793 | 0.25 | 51 | 12.30 | 8059 | 21.20 | 169 | 3.56 | |||||||||
| 7 | 159 | 585 | 0.31 | 51 | 15.45 | 7041 | 22.53 | 159 | 3.56 | |||||||||
| 8 | 146 | 556 | 0.30 | 51 | 15.05 | 6968 | 20.96 | 159 | 3.31 | |||||||||
| 9 | 138 | 544 | 0.28 | 51 | 13.98 | 4782 | 28.89 | 128 | 3.67 | |||||||||
| 10 | 135 | 610 | 0.25 | 51 | 12.67 | 5673 | 23.84 | 138 | 3.27 | |||||||||
| 11 | 134 | 644 | 0.25 | 51 | 12.26 | 5353 | 25.07 | 128 | 3.18 | |||||||||
| 12 | 132 | 545 | 0.27 | 51 | 13.71 | 5253 | 25.18 | 128 | 3.20 | |||||||||
| 13 | 114 | 492 | 0.26 | 51 | 13.08 | 5214 | 21.87 | 128 | 2.78 | |||||||||
| 14 | 106 | 401 | 0.30 | 51 | 15.02 | 4007 | 26.53 | 117 | 3.08 | |||||||||
| 15 | 100 | 335 | 0.36 | 38 | 13.14 | 3029 | 33.07 | 96 | 3.14 | |||||||||
| 16 | 88 | 259 | 0.39 | 38 | 14.39 | 2378 | 37.16 | 85 | 3.12 | |||||||||
| 17 | 78 | 188 | 0.46 | 38 | 17.03 | 1955 | 39.99 | 74 | 2.92 | |||||||||
| 18 | 76 | 346 | 0.25 | 38 | 9.10 | 3560 | 21.37 | 107 | 2.26 | |||||||||
| 19 | 63 | 98 | 0.43 | 38 | 15.75 | 690 | 91.97 | 51 | 4.60 | |||||||||
| 20 | 62 | 222 | 0.30 | 38 | 11.19 | 2093 | 29.80 | 85 | 2.50 | |||||||||
| 21 | 47 | 197 | 0.28 | 38 | 10.49 | 1901 | 24.68 | 74 | 1.80 | |||||||||
| 22 | 49 | 82 | 0.66 | 38 | 24.44 | 761 | 64.37 | 51 | 3.22 | |||||||||
