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J Med Genet 40:e30 doi:10.1136/jmg.40.3.e30
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Frequent genomic disorganisation of MLH1 in hereditary non-polyposis colorectal cancer (HNPCC) screened by RT-PCR on puromycin treated samples

Table 1

Primer sequences used for LD-PCR and breakpoint specific PCR

Case No Name Sequence Direction
Long PCR primers
    A L4-6F1 5`-CCTTTGGTGAGGTGACAGTGGGTGA-3` Sense
L4-6R1 5`-TGTCCTGGCAAAAGCGAGGTCTTAA-3` Antisense
    B L10-3F1 5`-CCTCAACCAAGACTCACAAGGAACA-3` Sense
L10-3R1 5`-TGGCTAAATCCTCAAAGGACTGCA-3` Antisense
    C Ex11F 5`-TCCCACTATCTAAGGTAATTG-3` Sense
Ex14R 5`-GGACCATTGTTGTAGTAGCTC-3` Antisense
PCR primers spanning the mutation breakpoint
    A L1 Int 4-5 F2 5`-AATCCAATTCAAGGACTGGG-3` Sense
L1 Int 4-5 R2 5`-AACTCACCACAACCTCTGCC-3` Antisense
    B L1 Int 10-2F4 5`-CAGGAGGTGCTGATAGCTTG-3` Sense
L1 Int 10-2R3 5`-TGAGCATCTTTTCAGGTGAG-3` Antisense
    C ML1 11-F6 5`-CCAGCAGGAGGAGCATAATG-3` Sense
ML1 13-R10 5`-GGATGTCAACCAGATACCAGTG-3` Antisense

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