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J Med Genet 37:371-375 doi:10.1136/jmg.37.5.371
  • Short report

Glycine to tryptophan substitution in type I collagen in a patient with OI type III: a unique collagen mutation

Abstract

We report a unique glycine substitution in type I collagen and highlight the clinical and biochemical consequences. The proband is a 9 year old Turkish boy with severely deforming osteogenesis imperfecta (OI). Biochemical analysis of (pro) collagen type I from a skin fibroblast culture showed both normal and overmodified α chains. Molecular analysis showed a G>T transversion in theCOL1A2 gene, resulting in the substitution of glycine by tryptophan at position 277 of the α2(I) collagen chain. Glycine substitutions in type I collagen are the most frequent cause of the severe and lethal forms of OI. The phenotypic severity varies according to the nature and localisation of the mutation. Substitutions of glycine by tryptophan, which is the most voluminous amino acid, have not yet been identified in type I collagen or any other fibrillar collagen. The severe, though non-lethal OI phenotype associated with this mutation may appear surprising in view of the huge size of the tryptophan residue. The fact that the mutation resides within a so called “non-lethal” region of the α2(I) collagen chain supports a regional model in phenotypic severity for α2(I) collagen mutations, in which the phenotype is determined primarily by the nature of the collagen domain rather than the type of glycine substitution involved.

Osteogenesis imperfecta (OI) is a heritable connective tissue disorder characterised by a varying degree of bone fragility. Generally, four major clinical and genetic subtypes are recognised (table 1).1

Table 1

The clinical features and mode of inheritance for all types of osteogenesis imperfecta are presented according to the classification of Sillence et al1

OI is caused by mutations in one of the two α chains of type I collagen, the principal component of the extracellular matrix in bone and skin. Type I collagen is a fibrillar collagen composed of two α1(I) chains, encoded by the COL1A1 gene, and one α2(I) chain, encoded by the COL1A2gene. In the majority of patients with mild OI a decreased amount of structurally normal type I collagen is found whereas in the more severe OI phenotypes (OI types II, III, and IV) a structurally abnormal type I collagen protein is seen. Most commonly, a structural defect is caused by the substitution of a glycine residue in the helical part of one or both type I collagen α chains. In the vast majority of cases, the mutations are “private” in that they have only been reported in one single person/family.

Glycine substitutions are by far the most frequently found amino acid alteration not only in type I collagen but also in the other collagen types known to form fibrils. Fibrillar collagens have an uninterrupted triple helical domain constructed from repeating Gly-X-Y triplets. The presence of glycine, the amino acid with the smallest side chain, in every third position of a collagen α chain is a prerequisite for correct folding of the three α chains into a collagen triple helix.

Here we present the clinical and biochemical consequences of a glycine to tryptophan substitution in the procollagen α2(I) chain in a patient with OI type III. Tryptophan, an amino acid residue which is not usually present in the type I collagen triple helical region, consists of an aromatic side chain composed of an indol ring bound by a methylene group. The result is a huge, neutral amino acid with a non-polar side chain, as such being very hydrophobic. The mutation presented here is unique in that it is the first reported tryptophan for glycine substitution in type I collagen causing OI.

Materials and methods

CLINICAL SUMMARY

The proband is a 9 year old Turkish boy, the only child of a non-consanguineous couple. The father and mother were 33 and 28 years old respectively at the time of his birth. They are healthy and have no history of fractures. At birth, the proband weighed 2300 g and had several fractures. His length was not recorded. Thereafter, he suffered countless other fractures, mainly of the extremities and also of the ribs. He was never able to walk or sit alone. At the age of 6 years 3 months, he was severely dwarfed with a length of 72 cm (below the 3rd centile) (fig 1A) and a head circumference of 49.5 cm. He had blue sclerae, pectus carinatum, severely deformed limbs, and dentinogenesis imperfecta. Now, at the age of 9 years, his fracture rate is still high, his limb deformities have progressed, and his general condition has worsened. His height is at present 83 cm (below the 3rd centile).X rays show, besides generalised osteoporosis, a large skull with irregular and undermineralised calvarium and wormian bones (fig 1B), thin ribs with old fractures, a severely deformed pelvis, and thin and markedly deformed long bones in the upper and lower extremities with popcorn deformities in the metaphyseal regions of the long bones (fig 1C). The clinical and radiological features correspond to the severely progressive type of OI (Sillence type III).

Figure 1

(A) The proband at the age of 6 years, showing severe dwarfism and deformities of the upper and lower extremities, indicative of the severely deforming type of OI (Sillence type III). (B) X ray of the skull at the age of 9 years showing thin, undermineralised calvarium and wormian bones. (C) X rays of the lower extremities taken at the age of 9 years, showing severe osteoporosis, thinning and bowing of the long bones, and the characteristic “popcorn” deformities in the metaphyseal regions of the femora and tibiae.

BIOCHEMICAL COLLAGEN STUDIES

A skin biopsy was obtained from the proband and a fibroblast culture was established under standard conditions. After labelling with14C-proline, the procollagen and collagen proteins were isolated from the medium and cell layer and examined by SDS electrophoresis as described by Nuytinck et al.2 Thermal stability measurement was performed as described by Bruckner and Prockop.3 The collagen processing and secretion were studied by pulsed chase experiments adapted from Forlino et al.4Confluent cells were labelled with 14C-proline for 30 minutes. Radiolabelled medium was removed and replaced with serum-free BME supplemented with ascorbic acid and 10 mmol/l cold proline. Cells were chased for 1 hour, 1.5 hours, 2 hours, 3.5 hours, 5 hours, and 10.5 hours. At the indicated times, the medium and cell layer were harvested separately and supplemented with protein inhibitors. The samples were run reduced without pepsin digestion on SDS-PAGE.

MOLECULAR COLLAGEN STUDIES

Genomic DNA of the parents was isolated from peripheral blood leucocytes using the Qiagen-Blood miniprep kit (Qiagen Inc, Chatworth, CA). Genomic DNA from the proband was isolated from dermal fibroblasts using the Easy-DNA kit (Invitrogen). Total RNA was isolated from cultured fibroblasts and cDNA was obtained, using M-MLV reverse transcriptase (Life Technologies) according to the manufacturer's instructions. PCR was performed using primers for the completeCOL1A1 and COL1A2coding regions and the amplimers were analysed by conformation sensitive gel electrophoresis (CSGE).5 Fragments showing an aberrant migration pattern were cloned and sequenced. The RT-PCR findings were confirmed by genomic DNA sequencing.

Results

BIOCHEMICAL COLLAGEN STUDIES

Polyacrylamide gel electrophoresis (PAGE-SDS) of procollagen and pepsin digested collagens from the medium and from the cell layer showed a population of normal and of more slowly migrating (pro)α1(I) and (pro)α2(I) collagen chains (fig 2). The collagen type I melting profiles showed a slight decrease of 1°C to 2°C in denaturing temperature between the mutant and normal type I collagen chains (data not shown). Pulse chase experiments showed only a mild delay in processing and secretion in comparison to a normal control cell line (data not shown).

Figure 2

Analysis by SDS-PAGE of pepsin derived collagens secreted in the medium (left panel) and collagens retained in the cell layer (right panel) by cultured fibroblasts from the proband compared to control samples. Lanes 1, 3, 4, and 6: control samples; lanes 2 and 5: the proband with OI type III. Broadening of the bands (arrows) representing the α1(I) and α2(I) collagen chains is visible in the medium as well as in the cell layer. This is because of the presence of two different populations of type I collagen α chains, a normal and a mutant, more slowly migrating population. In the medium as well as in the cell layer, both populations are seen in equal proportions.

MOLECULAR COLLAGEN STUDIES

Molecular screening by CSGE showed one migration shift in theCOL1A2 gene fragment covering exon 19 to exon 24 in the proband's cDNA. Cloning and sequencing of the relevantCOL1A2 fragment on cDNA as well as on genomic DNA resulted in the identification of a G to T transversion in position 1238 of the COL1A2 cDNA sequence (EMBL accession number Z74616), which changes the codon for glycine (GGG) to that for tryptophan (TGG) (fig 3) in position 277 of the proα2(I) collagen chain. Restriction digestion with the enzymeApaI of the respective amplimers confirmed the presence of the mutation in cDNA and genomic DNA in the proband and the absence of the mutation in genomic DNA from both parents.

Figure 3

Sequencing data of the normal and the mutant COL1A2 allele in the OI type III patient. A G to T transversion changing the codon for Gly (GGG) in position 277 of the proα2(I) collagen chain to the codon for Trp (TGG) is seen (arrow).

Discussion

The substitution of a glycine residue by a bulkier amino acid in type I collagen is a common mechanism in OI. Of the 20 naturally occurring amino acids, mutations in a codon for glycine (GGT, GGC, GGA, GGG) can result in the substitution by only a limited number of amino acids. Base changes in the first position can give rise to arginine, cysteine, serine, tryptophan, or a stop codon. Any base change occurring in the second position results in the substitution of the glycine residue by alanine, aspartic acid, glutamic acid, or valine. All of these amino acid substitutions have been found in both type I collagen genes, except two, namely glycine to tryptophan and glycine to a stop codon.

The preferential occurrence of a certain amino acid residue as a result of a base change in the codon for glycine is in part determined by the relative codon usage of the glycine codon (table 2). The tryptophan codon (TGG) can only arise from the codon GGG, which is the codon with the lowest prevalence in either the COL1A1or COL1A2 gene. This may be one reason why a glycine by tryptophan substitution has not been reported previously in OI.6 Similarly, glutamic acid residues (GAG), which also arise from the codon GGG, have only been reported once in theCOL1A1 gene (Nuytinck and De Paepe, personal communication) and once in the COL1A2gene.7 Until now, only the substitution of GGA by TGA resulting in a stop codon has not been found in type I collagen genes. Although nonsense mutations in the COL1A1gene are common in OI type I, they arise in all cases from the substitution of arginine for a stop codon (AGA or CGA to TGA) in the α1(I) collagen helix.

Table 2

The codon usage for the amino acid glycine (%) in both type I collagen genes (COL1A1 and COL1A2) is given, illustrating the scarcity of the GGG codon from which the tryptophan residue arises

The α2(I)-G277W substitution reported here is localised in a microdomain of the type I collagen molecule in which some glycine substitutions have been characterised (fig 4). All of the α1(I) collagen mutations described in this region result in lethal phenotypes while in the α2(I) chain they result in non-lethal phenotypes. From these data, in addition to the α2(I)-G277W substitution reported here, one can conclude that the region in the α2(I) collagen chain in which the mutation occurs rather than the type of the substituting amino acid is predominant in determining the clinical outcome. As this is the first report of a glycine to tryptophan substitution in type I collagen, one can speculate that a similar substitution either in the α1(I) or in other regions along the α2(I) chain would result in a lethal OI phenotype.

Figure 4

Overview of the published glycine substitutions identified in both type I collagen α chains in a region from amino acid residue 230 to 300. The position and nature of the glycine substitutions and the resulting clinical phenotypes are given. α1(I) collagen chain: G244C,9 G247S,10G256V,11 G289D (Nuytinck and De Paepe, personal communication), G298R.12 α2(I) collagen chain: G238S,8 G241D,13 G247S,14G247C,15 G259C,16 G268C,17G280S,17 G286D.17

On biochemical analysis, one can easily observe the presence of normal and α1(I) chains, a more slowly migrating population of α1(I) chains, and also α2(I) chains in the medium, which means that they are apparently well secreted. There is no significant accumulation of mutant α chains in the cell layer. Thermal stability measurements showed a mild decrease in denaturing temperature between the mutant and normal type I collagen trimers. These findings illustrate that a change in thermal stability does not necessarily influence the clinical outcome as already suggested earlier.8 Pulse chase experiments showed only a slight delay in processing and secretion of the type I collagen molecules, a phenomenon which is often observed in OI patients with a glycine substitution in type I collagen. As such, the in vitro effect of the glycine by tryptophan substitution on the molecular secretion and thermal stability is quite mild, taking into account that tryptophan is such a huge amino acid residue. One explanation for these findings is the N-terminal localisation of the tryptophan residue in the α2(I) collagen chain. As helix folding of type I collagen molecules proceeds from the C- to the N-terminal propeptide, only the winding of the helical region N-terminal to the substitution will be impaired.

Since each type I collagen molecule consists of two α1(I) chains and one α2(I) chain, which is the one mutated in this patient, half of the type I collagen molecules produced by this patient are expected to be normal while the other half will be structurally defective. Since no evidence was found in vitro for accumulation of mutant type I collagen molecules in the cell layer, one can assume that both normal and mutant molecules are present in equal proportions in the extracellular matrix and available for participation in collagen fibril formation.

Acknowledgments

We are grateful to K Wettinck, M Van Thielen, and N Aslan for excellent technical assistance. This work was supported by the FWO-Vlaanderen (Fund for Scientific Research, Flanders).

References