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No evidence of germline PTEN mutations in familial prostate cancer
  1. MATTHEW S FORREST*,
  2. STEPHEN M EDWARDS,
  3. RIFAT A HAMOUDI,
  4. DAVID P DEARNALEY,
  5. AUDREY ARDEN-JONES,
  6. ANNA DOWE,
  7. ANNETTE MURKIN,
  8. JO KELLY,
  9. M DAWN TEARE§,
  10. DOUGLAS F EASTON§,
  11. MARGARET A KNOWLES,
  12. D TIMOTHY BISHOP*,
  13. ROSALIND A EELES,
  14. THE CRC/BPG UK FAMILIAL PROSTATE CANCER STUDY COLLABORATORS**,
  15. THE EC BIOMED FAMILIAL PROSTATE CANCER STUDY COLLABORATORS**
  1. * ICRF Genetic Epidemiology Laboratory, St James's University Hospital, Beckett Street, Leeds LS9 7TF, UK
  2. CRC Section of Cancer Genetics and Academic Unit of Radiotherapy, Institute of Cancer Research, 15 Cotswold Road, Sutton, Surrey SM2 5NG, UK
  3. Royal Marsden NHS Trust, Downs Road, Sutton, Surrey SM2 5PT, UK
  4. § CRC Genetic Epidemiology Unit, Strangeways Research Laboratories, Institute of Public Health, Worts Causeway, Cambridge CB1 4RN, UK
  5. ICRF Cancer Medicine Unit, St James's University Hospital, Leeds LS9 7TF, UK
  6. ** Lists available on request.
  1. Professor Bishop, t.bishop{at}icrf.icnet.uk

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Editor—Prostate cancer is the second most common cause of male cancer mortality in the UK.1 Current indications are that like many common cancers, prostate cancer has an inherited component.2 Segregation analysis has led to the proposed model of at least one highly penetrant, dominant gene (with an estimated 88% penetrance for prostate cancer by the age of 85 in the highly susceptible population). Such a gene or genes would account for an estimated 43% of cases diagnosed at less than 55 years.2

One prostate cancer susceptibility locus (HPC1) has been reported on 1q24-253 and confirmed by Cooney et al 4 and Gronberg et al. 5 Latest estimates suggest that this locus would only account for 4% of families overall in the UK (upper 95% confidence interval (CI) limit of 31%).6 Another locus has been reported on 1q42.2-43 after a genome wide search of 47 French and German families.7 This locus is estimated to explain 50% of these families and appears to be distinct from theHPC1 locus as the two are estimated to be 60 cM apart. Confirmatory studies of this second locus have not yet been reported. A third locus has been reported. This locus, situated on the X chromosome, is estimated to explain approximately 16% of the families studied (including the families which were first typed to map the 1q24 locus).8 The heterogeneity lod score for linkage to this locus is 3.85 with the strongest evidence being a locus in proximity to the markers DXS297 and DXS1200.

While linkage studies have not identified chromosome 10 as the site of a predisposing gene, the long arm of chromosome 10 is the fourth commonest region showing loss of heterozygosity (LOH) in sporadic prostate cancers after 7q, 8p, and 16q.9 Deletion mapping studies have identified 10q23 to be the minimal region of loss.10-12 One candidate gene which maps adjacent to this region, MXI1, has been assessed for a role in familial prostate cancer susceptibility but no germline mutations were identified.13 PTEN/MMAC1(Phosphatase and Tensin homologue deleted on chromosome Ten/Mutated in Multiple Advanced Cancers 1), a tumour suppressor gene, has recently been identified at 10q23 through mapping of homozygous deletions in tumour cell lines.14-16 Li et al 14 15 and Steck et al 16 found PTENmutations in four out of four and one out of three prostate cancer cell lines respectively, suggesting a role in prostate carcinogenesis.15 16 Cairns et al 17 found LOH at 10q in 23 of 80 prostate tumours. Sequencing identified a mutation in PTEN in 10 of these 23 tumours (43%).17 More recently, Wanget al 18 found that of 60 prostate adenocarcinomas, 10-15% of primary stage B prostate carcinomas had PTEN inactivation by homozygous deletion. A number of studies have examined the frequency of somatic mutations in this gene. For instance, somatic mutations have been found in glioblastomas, melanomas, and breast and prostate carcinomas.15 16 Germline mutations inPTEN have been shown to be the cause of Cowden disease,19 20 whilePTEN deficient mice (PTEN +/-) show hyperplastic and dysplastic changes in the prostate and indeed develop prostate cancer.21 22

We hypothesised that germline PTEN mutations could be important in familial prostate cancer for the following three reasons: somatic mutations have been found inPTEN in prostate tumours; germline mutations in Cowden disease produce a phenotype (although with no evidence of an associated susceptibility to prostate cancer); andPTEN deficient mice exhibit prostate abnormalities. We have therefore screened the Cancer Research Campaign/British Prostate Group (CRC/BPG) UK Familial Prostate Cancer Study samples for evidence of PTENmutations.

The CRC/BPG UK Familial Prostate Cancer Study has collected lymphocyte DNA from 188 subjects from 50 prostate cancer families. These families were chosen because each contained three or more cases of prostate cancer at any age or related sib pairs where at least one man was less than 67 (original criterion was 65) years old at diagnosis. In fact, the majority of the clusters consist of affected sib pairs, with DNA often only available from cases. Twenty eight of the families had two affected males, 10 had three affected, nine had four affected, and three had five affected; the average age of onset was 66.9 years. Sample family pedigrees and DNA extraction protocols are described in Edwards et al.13 These families were previously analysed for linkage to HPC1and showed no evidence for linkage.6 DNA extracted from a known Cowden disease patient was used as a positive control for mutational analysis. The study was approved by the Royal Marsden NHS Trust Local Research Ethics Committee.

Linkage analysis was performed after genotyping using three polymorphic DNA markers flanking PTEN (D10S541, D10S1765, and D10S2491). Lod scores for linkage toPTEN were calculated under the assumption that prostate cancer was caused by an autosomal dominant gene with Carter's estimate of penetrance2 using the GENEHUNTER software23 and assuming the marker order of D10S1765/D10S2491 - 20.5 kb - PTEN - 0.2 cM - D10S541. Under this model of inheritance, there is an assumed lifetime penetrance (to 85 years of age) of 88% for prostate cancer in the highly susceptible population and with 0.6% of the general population carrying such a predisposition. The risk to age 85 in the non-susceptible male UK population was assumed to be 6.5%. Linkage analysis was performed under a model of homogeneity withPTEN being the only high penetrance predisposition gene for prostate cancer and also under a model of heterogeneity in which other high penetrance predispositions were assumed. For D10S1765 and D10S541, the allele frequencies were estimated from the family data, while for D10S2491 the alleles were assumed to be equally frequent as limited typing precluded estimation (at the time this was a new marker with no published allele frequencies). Non-parametric analysis of linkage was also performed using the NPL statistic of GENEHUNTER.23

Pairwise and multipoint linkage analysis showed no evidence of linkage to the PTEN region. Indeed, under homogeneity and tight linkage there was strong evidence against the hypothesis of a gene in the region of PTEN, which approached the conventional limit for exclusion mapping; the multipoint lod score was −1.96 close to the cut off of −2.0. Under heterogeneity, the overall heterogeneity lod score at the PTEN locus was 0.18 with an estimated 29% of the families being the result ofPTEN with a 95% confidence interval of 0% to 79%. Non-parametric linkage analysis using the NPL statistic of GENEHUNTER was also performed to guard against a misspecified mode of inheritance; again, this showed some evidence for allele sharing which did not reach formal significance in the region ofPTEN (NPL=0.88, p=0.19). Further, there was no difference in age of onset in those families consistent with linkage versus those against linkage to PTEN and there was no trend in terms of the proportion of linked families by number of affected males (data not shown).

Linkage analysis of common cancers is complicated by the presence of heterogeneity. As the majority of our families consist only of sib pairs, the opportunity of confirming identity by descent among the affected brothers is extremely limited, thus compromising the ability of linkage analysis to extract convincing evidence of cosegregation. While there is no formal evidence for linkage, even under multipoint analysis for a familial prostate cancer gene in thePTEN region of 10q23, the point estimates for the proportion of families linked is 29% (95% CI (0.00-0.79)) showing lack of discrimination from the family material. With these data, and given the putative role of PTEN in prostate cancer carcinogenesis, we decided to pursuePTEN further by mutation testing in families in which the brothers appeared to share at least one parental haplotype around PTEN.

All nine exons of the PTEN gene of the youngest diagnosed member from the remaining 37 families for whom DNA was available and a Cowden disease positive control were sequenced in both directions using dRhodamine labelled ddNTPs (Perkin Elmer). Primers were designed to amplify all coding sequence and at least 15 flanking base pairs.

The IVS8 +32T>G polymorphism in intron 8 reported by Wanget al 24 was found in 27 (73%) of the 37 cases. Forty five percent of the alleles were the “wild type” G, while the remaining 55% of alleles were T. Fourteen (38%) of the cases were TT homozygotes, 13 (35%) were TG heterozygotes, and 10 (27%) were GG homozygotes; these figures are consistent with Hardy-Weinberg equilibrium (χ2 with 2 df=3.1, p=0.21). No association was found between age of onset of prostate cancer and genotype (TT v TGv GG) when the cases were divided into two categories depending on age of onset being less than or equal to 60 years of age v 61 years of age or higher (χ2 with 2 df=1.0, p=0.61).

A novel polymorphism (IVS4 −31insT) was found in intron 4 in one patient, but not in the patient's brother who also had prostate cancer, suggesting that it is not important in prostate cancer susceptibility.

While a missense mutation, c.494G>A (p.165G>E), was found in exon 6 of the Cowden disease positive control used, no coding mutations were found in the prostate cancer families. In some cases sequencing only extended 15 bp into non-coding sequence, so non-coding mutations which may possibly influence RNA splicing or stability may have gone undetected. The promoter and regulator regions ofPTEN are also unknown at present, so any mutations in these regions were also not detected. TheHPC1 locus in 1q24-25 has been shown to be preferentially involved in families with four or more affected cases6 and this might also be the case forPTEN.

Our linkage results suggest that it is unlikely thatPTEN or any gene nearby in the 10q23.3 region plays any significant part as a high penetrance susceptibility gene for prostate cancer. This is consistent with the concept that somatic mutations in PTEN are a late event in carcinogenesis, as suggested by Feilotter et al,25 who found very fewPTEN mutations in primary prostate cancer tumours, and the work of Cairns et al,17 who found a positive correlation between high prostate tumour grade and presence of PTENmutation.

Acknowledgments

This work was supported in part by a grant from the EC BIOMED II programme, The Cancer Research Campaign UK, Prostate Research Campaign UK, the Neil MacTaggart Fund, the Prostate Cancer Charitable Trust, and the Imperial Cancer Research Fund. Sequencing was partly conducted in the Jean Rook Gene Cloning Laboratory which is supported by BREAKTHROUGH Breast Cancer Charity No 328323. The authors would like to thank Drs Charis Eng, Chris Bennett, and Geoff Woods for the positive PTEN mutated control sample and confirmation of the mutation identified here and Drs David Snary, Lorna Stewart, and Jennifer Hamilton at the ICRF Applied Development Laboratory for their assistance with the determination of the genomic sequence of PTEN and discussions relevant to this work.

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